Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--1409
(569 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U06469-1|AAA53215.1| 524|Homo sapiens HEAAC1 protein. 31 3.8
U08989-1|AAA68628.1| 524|Homo sapiens glutamate transporter pro... 30 5.0
AF074911-1|AAC27511.3| 524|Homo sapiens neuronal and epithelial... 30 5.0
U03506-1|AAA50430.1| 525|Homo sapiens excitatory amino acid tra... 29 8.7
AL162587-1|CAH71965.1| 524|Homo sapiens solute carrier family 1... 29 8.7
AL136231-6|CAI41264.1| 524|Homo sapiens solute carrier family 1... 29 8.7
AB008536-1|BAB83767.1| 524|Homo sapiens excitatory amino acid t... 29 8.7
>U06469-1|AAA53215.1| 524|Homo sapiens HEAAC1 protein.
Length = 524
Score = 30.7 bits (66), Expect = 3.8
Identities = 22/82 (26%), Positives = 34/82 (41%), Gaps = 4/82 (4%)
Frame = -1
Query: 266 NKLEAQSGLKMLLEYFVHGIIEYDLGSILLVFRTPXXXXXXXXXXXXXXXLEVK----FL 99
+ + + GL+ +L YF +I LG +L+V P EV L
Sbjct: 84 SNVSGKIGLRAVLYYFCTTLIAVILGIVLVVSIKPGVTQKVGEIARTGSTPEVSTVDAML 143
Query: 98 DRRKTNISESICQRCFHQSRTK 33
D + E++ Q CF Q +TK
Sbjct: 144 DLIRNMFPENLVQACFQQYKTK 165
>U08989-1|AAA68628.1| 524|Homo sapiens glutamate transporter
protein.
Length = 524
Score = 30.3 bits (65), Expect = 5.0
Identities = 21/82 (25%), Positives = 35/82 (42%), Gaps = 4/82 (4%)
Frame = -1
Query: 266 NKLEAQSGLKMLLEYFVHGIIEYDLGSILLVFRTPXXXXXXXXXXXXXXXLEVK----FL 99
+ + + GL++++ YF +I LG +L+V P EV L
Sbjct: 84 SNVSGKIGLRVVVYYFCTTLIAVILGIVLVVSIKPGVTQKVGEIARTGSTPEVSTVDAML 143
Query: 98 DRRKTNISESICQRCFHQSRTK 33
D + E++ Q CF Q +TK
Sbjct: 144 DLIRNMFPENLVQACFQQYKTK 165
>AF074911-1|AAC27511.3| 524|Homo sapiens neuronal and epithelial
glutamate transporter protein.
Length = 524
Score = 30.3 bits (65), Expect = 5.0
Identities = 21/82 (25%), Positives = 35/82 (42%), Gaps = 4/82 (4%)
Frame = -1
Query: 266 NKLEAQSGLKMLLEYFVHGIIEYDLGSILLVFRTPXXXXXXXXXXXXXXXLEVK----FL 99
+ + + GL++++ YF +I LG +L+V P EV L
Sbjct: 84 SNVSGKIGLRVVVYYFCTTLIAVILGIVLVVSIKPGVTQKVGEIARTGSTPEVSTVDAML 143
Query: 98 DRRKTNISESICQRCFHQSRTK 33
D + E++ Q CF Q +TK
Sbjct: 144 DLIRNMFPENLVQACFQQYKTK 165
>U03506-1|AAA50430.1| 525|Homo sapiens excitatory amino acid
transporter3 protein.
Length = 525
Score = 29.5 bits (63), Expect = 8.7
Identities = 21/82 (25%), Positives = 34/82 (41%), Gaps = 4/82 (4%)
Frame = -1
Query: 266 NKLEAQSGLKMLLEYFVHGIIEYDLGSILLVFRTPXXXXXXXXXXXXXXXLEVK----FL 99
+ + + GL+ ++ YF +I LG +L+V P EV L
Sbjct: 85 SNVSGKIGLRAVVYYFCTTLIAVILGIVLVVSIKPGVTQKVGEIARTGSTPEVSTVDAML 144
Query: 98 DRRKTNISESICQRCFHQSRTK 33
D + E++ Q CF Q +TK
Sbjct: 145 DLIRNMFPENLVQACFQQYKTK 166
>AL162587-1|CAH71965.1| 524|Homo sapiens solute carrier family 1
(neuronal/epithelial highg) 1 protein.
Length = 524
Score = 29.5 bits (63), Expect = 8.7
Identities = 21/82 (25%), Positives = 34/82 (41%), Gaps = 4/82 (4%)
Frame = -1
Query: 266 NKLEAQSGLKMLLEYFVHGIIEYDLGSILLVFRTPXXXXXXXXXXXXXXXLEVK----FL 99
+ + + GL+ ++ YF +I LG +L+V P EV L
Sbjct: 84 SNVSGKIGLRAVVYYFCTTLIAVILGIVLVVSIKPGVTQKVGEIARTGSTPEVSTVDAML 143
Query: 98 DRRKTNISESICQRCFHQSRTK 33
D + E++ Q CF Q +TK
Sbjct: 144 DLIRNMFPENLVQACFQQYKTK 165
>AL136231-6|CAI41264.1| 524|Homo sapiens solute carrier family 1
(neuronal/epithelial highde 1 protein.
Length = 524
Score = 29.5 bits (63), Expect = 8.7
Identities = 21/82 (25%), Positives = 34/82 (41%), Gaps = 4/82 (4%)
Frame = -1
Query: 266 NKLEAQSGLKMLLEYFVHGIIEYDLGSILLVFRTPXXXXXXXXXXXXXXXLEVK----FL 99
+ + + GL+ ++ YF +I LG +L+V P EV L
Sbjct: 84 SNVSGKIGLRAVVYYFCTTLIAVILGIVLVVSIKPGVTQKVGEIARTGSTPEVSTVDAML 143
Query: 98 DRRKTNISESICQRCFHQSRTK 33
D + E++ Q CF Q +TK
Sbjct: 144 DLIRNMFPENLVQACFQQYKTK 165
>AB008536-1|BAB83767.1| 524|Homo sapiens excitatory amino acid
transporter-3 protein.
Length = 524
Score = 29.5 bits (63), Expect = 8.7
Identities = 21/82 (25%), Positives = 34/82 (41%), Gaps = 4/82 (4%)
Frame = -1
Query: 266 NKLEAQSGLKMLLEYFVHGIIEYDLGSILLVFRTPXXXXXXXXXXXXXXXLEVK----FL 99
+ + + GL+ ++ YF +I LG +L+V P EV L
Sbjct: 84 SNVSGKIGLRAVVYYFCTTLIAVILGIVLVVSIKPGVTQKVGEIARTGSTPEVSTVDAML 143
Query: 98 DRRKTNISESICQRCFHQSRTK 33
D + E++ Q CF Q +TK
Sbjct: 144 DLIRNMFPENLVQACFQQYKTK 165
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 70,070,814
Number of Sequences: 237096
Number of extensions: 1311506
Number of successful extensions: 1958
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1928
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1951
length of database: 76,859,062
effective HSP length: 86
effective length of database: 56,468,806
effective search space used: 5816287018
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -