Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1409
         (569 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U41263-2|ABB88212.1| 1015|Caenorhabditis elegans Hypothetical pr...    29   3.1  
U41263-1|AAC24429.1| 1028|Caenorhabditis elegans Hypothetical pr...    29   3.1  
Z83233-2|CAB05761.1|  338|Caenorhabditis elegans Hypothetical pr...    27   9.5  
Z81143-5|CAB03518.2|  370|Caenorhabditis elegans Hypothetical pr...    27   9.5  
AF273797-2|AAG15146.1|  338|Caenorhabditis elegans nuclear recep...    27   9.5  
AC006675-6|AAK84556.2|  433|Caenorhabditis elegans Nuclear hormo...    27   9.5  

>U41263-2|ABB88212.1| 1015|Caenorhabditis elegans Hypothetical
           protein T19D12.4b protein.
          Length = 1015

 Score = 28.7 bits (61), Expect = 3.1
 Identities = 15/35 (42%), Positives = 18/35 (51%)
 Frame = +2

Query: 350 RRLTDDMLRKRVSITADAVHLTARRTNATTSFLTA 454
           R+LTD      V+   D VH T   TN T + LTA
Sbjct: 428 RKLTDGNTLDAVNAAIDTVHYTGGLTNVTKAQLTA 462


>U41263-1|AAC24429.1| 1028|Caenorhabditis elegans Hypothetical
           protein T19D12.4a protein.
          Length = 1028

 Score = 28.7 bits (61), Expect = 3.1
 Identities = 15/35 (42%), Positives = 18/35 (51%)
 Frame = +2

Query: 350 RRLTDDMLRKRVSITADAVHLTARRTNATTSFLTA 454
           R+LTD      V+   D VH T   TN T + LTA
Sbjct: 441 RKLTDGNTLDAVNAAIDTVHYTGGLTNVTKAQLTA 475


>Z83233-2|CAB05761.1|  338|Caenorhabditis elegans Hypothetical
           protein K06B4.2 protein.
          Length = 338

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 12/37 (32%), Positives = 18/37 (48%)
 Frame = +1

Query: 343 FRTPAHRRYAPQTCQYHRGCXAPDSAAHKCNYELFNR 453
           F T A + YA  TC+Y + C    +   KC +  F +
Sbjct: 26  FFTRATKNYAKFTCKYDKKCFESFTILPKCQFCRFKK 62


>Z81143-5|CAB03518.2|  370|Caenorhabditis elegans Hypothetical
           protein ZK265.7 protein.
          Length = 370

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 12/28 (42%), Positives = 18/28 (64%)
 Frame = +2

Query: 302 EEHRDRILILNRRFLERRLTDDMLRKRV 385
           EE R+R  +  RR  ERRL +D + +R+
Sbjct: 294 EEERERYRMERRRAEERRLQEDTILRRI 321


>AF273797-2|AAG15146.1|  338|Caenorhabditis elegans nuclear receptor
           NHR-52 protein.
          Length = 338

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 12/37 (32%), Positives = 18/37 (48%)
 Frame = +1

Query: 343 FRTPAHRRYAPQTCQYHRGCXAPDSAAHKCNYELFNR 453
           F T A + YA  TC+Y + C    +   KC +  F +
Sbjct: 26  FFTRATKNYAKFTCKYDKKCFESFTILPKCQFCRFKK 62


>AC006675-6|AAK84556.2|  433|Caenorhabditis elegans Nuclear hormone
           receptor familyprotein 98 protein.
          Length = 433

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 11/27 (40%), Positives = 16/27 (59%)
 Frame = -1

Query: 101 LDRRKTNISESICQRCFHQSRTKVRGS 21
           L+     +S  ICQ CFHQ   K++G+
Sbjct: 331 LEPTHEELSYMICQLCFHQVGKKLQGN 357


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,432,353
Number of Sequences: 27780
Number of extensions: 220103
Number of successful extensions: 461
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 444
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 461
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1187327456
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)