Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1408
         (468 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

S73225-1|AAB30811.1|  327|Tribolium castaneum protein ( Triboliu...    23   1.4  
AY362544-1|AAQ63456.1|  268|Tribolium castaneum chitin synthase ...    21   7.5  
AY362543-1|AAQ63455.1|  677|Tribolium castaneum chitin synthase ...    21   7.5  
AY295879-1|AAQ62692.1| 1464|Tribolium castaneum chitin synthase ...    21   7.5  
AY291477-1|AAQ55061.1| 1464|Tribolium castaneum chitin synthase ...    21   7.5  
U09586-2|AAC47271.1|  712|Tribolium castaneum protease, reverse ...    20   9.9  

>S73225-1|AAB30811.1|  327|Tribolium castaneum protein ( Tribolium
           castaneum homeodomainprotein mRNA, complete cds. ).
          Length = 327

 Score = 23.0 bits (47), Expect = 1.4
 Identities = 8/23 (34%), Positives = 12/23 (52%)
 Frame = +2

Query: 233 DPDAKVALKP*LKPVWCFCVAKS 301
           +P+ K   +P L P W +C   S
Sbjct: 178 EPEKKTESQPMLWPAWVYCTRYS 200


>AY362544-1|AAQ63456.1|  268|Tribolium castaneum chitin synthase
           protein.
          Length = 268

 Score = 20.6 bits (41), Expect = 7.5
 Identities = 6/12 (50%), Positives = 10/12 (83%)
 Frame = +3

Query: 120 IWKMDQYXCSHR 155
           ++++DQ  CSHR
Sbjct: 9   VFRLDQDQCSHR 20


>AY362543-1|AAQ63455.1|  677|Tribolium castaneum chitin synthase
           protein.
          Length = 677

 Score = 20.6 bits (41), Expect = 7.5
 Identities = 6/12 (50%), Positives = 10/12 (83%)
 Frame = +3

Query: 120 IWKMDQYXCSHR 155
           ++++DQ  CSHR
Sbjct: 323 VFRLDQDQCSHR 334


>AY295879-1|AAQ62692.1| 1464|Tribolium castaneum chitin synthase
           protein.
          Length = 1464

 Score = 20.6 bits (41), Expect = 7.5
 Identities = 6/12 (50%), Positives = 10/12 (83%)
 Frame = +3

Query: 120 IWKMDQYXCSHR 155
           ++++DQ  CSHR
Sbjct: 556 VFRLDQDQCSHR 567


>AY291477-1|AAQ55061.1| 1464|Tribolium castaneum chitin synthase
           CHS2 protein.
          Length = 1464

 Score = 20.6 bits (41), Expect = 7.5
 Identities = 6/12 (50%), Positives = 10/12 (83%)
 Frame = +3

Query: 120 IWKMDQYXCSHR 155
           ++++DQ  CSHR
Sbjct: 556 VFRLDQDQCSHR 567


>U09586-2|AAC47271.1|  712|Tribolium castaneum protease, reverse
           transcriptase andRNase H protein.
          Length = 712

 Score = 20.2 bits (40), Expect = 9.9
 Identities = 8/17 (47%), Positives = 12/17 (70%)
 Frame = +2

Query: 191 DQISDAFLDAHLNQDPD 241
           D++ D FL+A L + PD
Sbjct: 580 DRVKDLFLEAVLLRYPD 596


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 113,693
Number of Sequences: 336
Number of extensions: 2190
Number of successful extensions: 6
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 122,585
effective HSP length: 52
effective length of database: 105,113
effective search space used: 10826639
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)