Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1408
         (468 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC14F5.05c |sam1||S-adenosylmethionine synthetase |Schizosacch...    95   6e-21
SPCC1682.15 |mug122||PX/PXA domain protein|Schizosaccharomyces p...    27   1.1  
SPAC1783.05 |hrp1|chd1|ATP-dependent DNA helicase Hrp1|Schizosac...    25   4.4  
SPAC57A7.13 |||RNA-binding protein|Schizosaccharomyces pombe|chr...    25   7.6  
SPBC609.01 |||ribonuclease II |Schizosaccharomyces pombe|chr 2||...    25   7.6  

>SPBC14F5.05c |sam1||S-adenosylmethionine synthetase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 382

 Score = 94.7 bits (225), Expect = 6e-21
 Identities = 49/105 (46%), Positives = 63/105 (60%)
 Frame = +2

Query: 140 FXFTSESVGEGHPDKMCDQISDAFLDAHLNQDPDAKVALKP*LKPVWCFCVAKSHXKLTW 319
           F FTSESVGEGHPDK+CDQISDA LDA L  DP +KVA +   K        +   +   
Sbjct: 5   FLFTSESVGEGHPDKICDQISDAILDACLKDDPFSKVACETASKTGMVMVFGEITTRSQI 64

Query: 320 IIKKLCAKRSNILVMMXPSKGLDYKTCSVMLALXQQSPNIAAGVH 454
             +K+       +      KG DYKTC+V++A+ QQSP+IA G+H
Sbjct: 65  DYQKVIRNTIKSIGYDDSEKGFDYKTCNVLVAIEQQSPDIAQGLH 109


>SPCC1682.15 |mug122||PX/PXA domain protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 749

 Score = 27.5 bits (58), Expect = 1.1
 Identities = 20/61 (32%), Positives = 25/61 (40%), Gaps = 1/61 (1%)
 Frame = +2

Query: 35  LYXWANSKFXMPETSKMNGYAKTNGH-SYDMEDGSVFXFTSESVGEGHPDKMCDQISDAF 211
           L  W + K  M   S       T    S+D E  S+F   S+SV E      CD+ SD  
Sbjct: 630 LNVWPDEKKAMESHSTRAHRRSTESKISFDSEADSLFEEASKSVPEDPVSVFCDEESDES 689

Query: 212 L 214
           L
Sbjct: 690 L 690


>SPAC1783.05 |hrp1|chd1|ATP-dependent DNA helicase
            Hrp1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1373

 Score = 25.4 bits (53), Expect = 4.4
 Identities = 8/23 (34%), Positives = 17/23 (73%)
 Frame = +1

Query: 190  RPNKRRFSRRAPESGSGRKSRIE 258
            +P KR+++R+AP   S R++ ++
Sbjct: 1211 QPTKRKYNRKAPTKSSTRQTTLD 1233


>SPAC57A7.13 |||RNA-binding protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 565

 Score = 24.6 bits (51), Expect = 7.6
 Identities = 10/27 (37%), Positives = 15/27 (55%)
 Frame = -3

Query: 196 LVAHFVWMTLANRFRCEXKY*SIFHII 116
           L+ HFVW +      CE K+ S  H++
Sbjct: 394 LLLHFVWKSALICVLCERKFQSWGHVV 420


>SPBC609.01 |||ribonuclease II |Schizosaccharomyces pombe|chr
            2|||Manual
          Length = 1157

 Score = 24.6 bits (51), Expect = 7.6
 Identities = 10/20 (50%), Positives = 12/20 (60%)
 Frame = -1

Query: 303  CDFATQKHHTGFSYGFNATF 244
            CDF  QKH    S+  NA+F
Sbjct: 1012 CDFNEQKHELYLSWRTNASF 1031


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,901,045
Number of Sequences: 5004
Number of extensions: 35467
Number of successful extensions: 72
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 69
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 70
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 178394480
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)