Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1408
         (468 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_03_0090 - 12347165-12348349                                         91   3e-19
05_01_0264 + 2030080-2031270                                           89   2e-18
01_02_0051 - 10655867-10657057                                         88   3e-18
12_02_0655 + 21588662-21589051                                         32   0.20 
08_02_0975 + 23205590-23205733,23206813-23206894,23207017-232071...    28   3.3  
01_06_0919 - 32993752-32993856,32994383-32994592,32994666-329952...    27   5.7  
03_01_0035 - 322993-323280,323385-323528,324055-324180,324827-32...    27   7.5  

>01_03_0090 - 12347165-12348349
          Length = 394

 Score = 91.5 bits (217), Expect = 3e-19
 Identities = 48/105 (45%), Positives = 61/105 (58%)
 Frame = +2

Query: 140 FXFTSESVGEGHPDKMCDQISDAFLDAHLNQDPDAKVALKP*LKPVWCFCVAKSHXKLTW 319
           F FTSESV EGHPDK+CDQ+SDA LDA L QDPD+KVA +   K        +   K T 
Sbjct: 6   FLFTSESVNEGHPDKLCDQVSDAVLDACLAQDPDSKVACETCTKTNMVMVFGEITTKATV 65

Query: 320 IIKKLCAKRSNILVMMXPSKGLDYKTCSVMLALXQQSPNIAAGVH 454
             +K+       +  +    GLD   C V++ + QQSP+IA GVH
Sbjct: 66  DYEKIVRDTCRGIGFVSDDVGLDADRCKVLVNIEQQSPDIAQGVH 110


>05_01_0264 + 2030080-2031270
          Length = 396

 Score = 89.0 bits (211), Expect = 2e-18
 Identities = 46/105 (43%), Positives = 61/105 (58%)
 Frame = +2

Query: 140 FXFTSESVGEGHPDKMCDQISDAFLDAHLNQDPDAKVALKP*LKPVWCFCVAKSHXKLTW 319
           F FTSESV EGHPDK+CDQ+SDA LDA L +DPD+KVA +   K        +   K   
Sbjct: 7   FLFTSESVNEGHPDKLCDQVSDAVLDACLAEDPDSKVACETCTKTNMVMVFGEITTKANV 66

Query: 320 IIKKLCAKRSNILVMMXPSKGLDYKTCSVMLALXQQSPNIAAGVH 454
             +K+  +    +  +    GLD   C V++ + QQSP+IA GVH
Sbjct: 67  DYEKIVRETCRNIGFVSADVGLDADHCKVLVNIEQQSPDIAQGVH 111


>01_02_0051 - 10655867-10657057
          Length = 396

 Score = 88.2 bits (209), Expect = 3e-18
 Identities = 47/111 (42%), Positives = 63/111 (56%)
 Frame = +2

Query: 122 MEDGSVFXFTSESVGEGHPDKMCDQISDAFLDAHLNQDPDAKVALKP*LKPVWCFCVAKS 301
           M +   F FTSESV EGHPDK+CDQISDA LDA L +DP++KVA +   K        + 
Sbjct: 1   MAEVDTFLFTSESVNEGHPDKLCDQISDAVLDACLAEDPESKVACETCTKTNMVMVFGEI 60

Query: 302 HXKLTWIIKKLCAKRSNILVMMXPSKGLDYKTCSVMLALXQQSPNIAAGVH 454
             K     +K+       +  +    GLD + C V++ + QQSP+IA GVH
Sbjct: 61  TTKANVDYEKIVRDTCRGIGFVSNDVGLDAEHCKVLVNIEQQSPDIAQGVH 111


>12_02_0655 + 21588662-21589051
          Length = 129

 Score = 32.3 bits (70), Expect = 0.20
 Identities = 21/55 (38%), Positives = 25/55 (45%)
 Frame = +1

Query: 88  WIRENQRXQL*YGRWISIXVHIGICWRGSSRQNVRPNKRRFSRRAPESGSGRKSR 252
           WI   QR ++  G W           RGS    V P +RR SRR P SG  R+ R
Sbjct: 27  WIGGRQRPRMWIGDWREE--------RGSVAVGVAPGRRRESRRRPGSGEARRRR 73


>08_02_0975 +
           23205590-23205733,23206813-23206894,23207017-23207127,
           23207212-23208006,23208338-23208704,23209219-23209300,
           23209477-23209532,23209888-23209942
          Length = 563

 Score = 28.3 bits (60), Expect = 3.3
 Identities = 15/30 (50%), Positives = 19/30 (63%)
 Frame = +1

Query: 325 QKVVRETVKHIGYDDXXQRLRLQDMQCDAR 414
           QK+VR  V+H+       RLRL+D  CDAR
Sbjct: 2   QKLVRSFVRHL------TRLRLRDSHCDAR 25


>01_06_0919 -
           32993752-32993856,32994383-32994592,32994666-32995220,
           32995705-32995926,32996381-32996511,32997456-32998353,
           32998453-32998530,32998612-32998683,32998728-32998763,
           32999413-33000353,33000531-33000659,33000751-33000894,
           33000994-33001060,33002434-33002502,33003144-33003278
          Length = 1263

 Score = 27.5 bits (58), Expect = 5.7
 Identities = 14/40 (35%), Positives = 21/40 (52%), Gaps = 2/40 (5%)
 Frame = +2

Query: 104 NGHSYDMEDGSVFXFTSESVGEGHPDKMCD--QISDAFLD 217
           N  SY++E        S S+  G PD+ CD   +SD ++D
Sbjct: 289 NNQSYELEQLPQNICESSSMQVGSPDQYCDDTSLSDYYMD 328


>03_01_0035 -
           322993-323280,323385-323528,324055-324180,324827-324882,
           325497-325517,327153-327420,327904-329787
          Length = 928

 Score = 27.1 bits (57), Expect = 7.5
 Identities = 12/41 (29%), Positives = 17/41 (41%)
 Frame = +1

Query: 325 QKVVRETVKHIGYDDXXQRLRLQDMQCDARTXPTITKHCCW 447
           Q  +   V+     D  QR+ L D Q  AR    ++  C W
Sbjct: 480 QSTLSSAVEKSASGDCPQRINLMDQQNSARNNSDVSTSCPW 520


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,976,105
Number of Sequences: 37544
Number of extensions: 250375
Number of successful extensions: 533
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 515
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 527
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 943260316
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)