Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--1408
(468 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_46130| Best HMM Match : No HMM Matches (HMM E-Value=.) 102 2e-22
SB_11655| Best HMM Match : No HMM Matches (HMM E-Value=.) 94 6e-20
SB_53305| Best HMM Match : S-AdoMet_synt_N (HMM E-Value=0.0056) 77 6e-15
SB_46129| Best HMM Match : No HMM Matches (HMM E-Value=.) 77 6e-15
SB_47946| Best HMM Match : No HMM Matches (HMM E-Value=.) 62 3e-10
SB_15121| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 3.4
SB_25695| Best HMM Match : PDEase_I (HMM E-Value=3.1e-36) 27 5.9
SB_31747| Best HMM Match : Myotub-related (HMM E-Value=0) 27 5.9
SB_9094| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 7.7
>SB_46130| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 407
Score = 102 bits (244), Expect = 2e-22
Identities = 54/110 (49%), Positives = 66/110 (60%)
Frame = +2
Query: 134 SVFXFTSESVGEGHPDKMCDQISDAFLDAHLNQDPDAKVALKP*LKPVWCFCVAKSHXKL 313
+ F FTSESVGEGHPDKMCDQISDA LDAHL QDP+AKVA + K +
Sbjct: 29 NTFLFTSESVGEGHPDKMCDQISDAILDAHLKQDPNAKVACETVAKTGMILLCGEITSNA 88
Query: 314 TWIIKKLCAKRSNILVMMXPSKGLDYKTCSVMLALXQQSPNIAAGVHDNR 463
+ + + + KG DYKTC+V++AL QQS +IA GVH R
Sbjct: 89 VVDYQSVVRQCIKDIGYDDSEKGFDYKTCNVLVALEQQSVDIAHGVHVGR 138
>SB_11655| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 428
Score = 93.9 bits (223), Expect = 6e-20
Identities = 56/118 (47%), Positives = 67/118 (56%), Gaps = 2/118 (1%)
Frame = +2
Query: 116 YDMEDGSVFXFTSESVGEGHPDKMCDQISDAFLDAHLNQDPDAKVALKP*LKP--VWCFC 289
Y D F FTSESV EGH DKMCDQISDA LDAHL QDP AKVA + K V F
Sbjct: 44 YSTSDCDNFLFTSESVNEGHSDKMCDQISDAVLDAHLEQDPYAKVACETATKTGLVLLFG 103
Query: 290 VAKSHXKLTWIIKKLCAKRSNILVMMXPSKGLDYKTCSVMLALXQQSPNIAAGVHDNR 463
S+ ++ + + + + S G DYKTCSV+LA+ +Q IA VH NR
Sbjct: 104 EITSNARVDY--QAVVRNTIRDIGYNDSSTGFDYKTCSVLLAIQEQVAEIAQTVHLNR 159
>SB_53305| Best HMM Match : S-AdoMet_synt_N (HMM E-Value=0.0056)
Length = 70
Score = 77.4 bits (182), Expect = 6e-15
Identities = 34/40 (85%), Positives = 36/40 (90%)
Frame = +2
Query: 134 SVFXFTSESVGEGHPDKMCDQISDAFLDAHLNQDPDAKVA 253
+ F FTSESVGEGHPDKMCDQISDA LDAHL QDP+AKVA
Sbjct: 29 NTFLFTSESVGEGHPDKMCDQISDAILDAHLKQDPNAKVA 68
>SB_46129| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 91
Score = 77.4 bits (182), Expect = 6e-15
Identities = 34/40 (85%), Positives = 36/40 (90%)
Frame = +2
Query: 134 SVFXFTSESVGEGHPDKMCDQISDAFLDAHLNQDPDAKVA 253
+ F FTSESVGEGHPDKMCDQISDA LDAHL QDP+AKVA
Sbjct: 9 NTFLFTSESVGEGHPDKMCDQISDAILDAHLKQDPNAKVA 48
Score = 64.1 bits (149), Expect = 6e-11
Identities = 27/42 (64%), Positives = 34/42 (80%)
Frame = +1
Query: 244 KSRIETITKTGMVLLCGEITXKAXVDYQKVVRETVKHIGYDD 369
K E++ KTGM+++CGEIT A VDYQKVVR+T+K IGYDD
Sbjct: 46 KVACESVAKTGMIVVCGEITSLANVDYQKVVRDTIKQIGYDD 87
>SB_47946| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 460
Score = 61.7 bits (143), Expect = 3e-10
Identities = 25/37 (67%), Positives = 32/37 (86%)
Frame = +1
Query: 259 TITKTGMVLLCGEITXKAXVDYQKVVRETVKHIGYDD 369
++ KTGM+++CGEIT A VDYQKVVR+T+K IGYDD
Sbjct: 2 SVAKTGMIVVCGEITSLANVDYQKVVRDTIKQIGYDD 38
Score = 47.2 bits (107), Expect = 7e-06
Identities = 20/31 (64%), Positives = 25/31 (80%)
Frame = +2
Query: 374 SKGLDYKTCSVMLALXQQSPNIAAGVHDNRN 466
SKG DYKTC+V+ A+ QQSP+IA GVH R+
Sbjct: 40 SKGFDYKTCTVLQAIEQQSPDIAQGVHIGRS 70
>SB_15121| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 378
Score = 28.3 bits (60), Expect = 3.4
Identities = 16/44 (36%), Positives = 21/44 (47%), Gaps = 2/44 (4%)
Frame = +1
Query: 151 IGICWRGSSRQNV--RPNKRRFSRRAPESGSGRKSRIETITKTG 276
+G WR + R +R+ S P GS KSR+ TIT G
Sbjct: 130 LGFLWRVEPGNRILRRKKRRKRSPPTPRLGSDSKSRLLTITPYG 173
>SB_25695| Best HMM Match : PDEase_I (HMM E-Value=3.1e-36)
Length = 646
Score = 27.5 bits (58), Expect = 5.9
Identities = 12/41 (29%), Positives = 21/41 (51%)
Frame = +1
Query: 139 IXVHIGICWRGSSRQNVRPNKRRFSRRAPESGSGRKSRIET 261
+ + G+ W S QN++ ++R+ R P G RK +T
Sbjct: 220 VEIENGVYWMIMSEQNLQEHRRKSEARKPLRGVKRKGDPDT 260
>SB_31747| Best HMM Match : Myotub-related (HMM E-Value=0)
Length = 550
Score = 27.5 bits (58), Expect = 5.9
Identities = 15/53 (28%), Positives = 26/53 (49%), Gaps = 2/53 (3%)
Frame = -1
Query: 327 LIIHVSFXCDFATQ--KHHTGFSYGFNATFASGS*FRCASRKASLIWSHILSG 175
L H++F C + H S ++ A + FRC+ R S++W H+ +G
Sbjct: 263 LTCHLNFACRVCRTYPRLHVIPSSISDSDLAKVASFRCSGRFPSIVWRHMTNG 315
>SB_9094| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 510
Score = 27.1 bits (57), Expect = 7.7
Identities = 14/28 (50%), Positives = 18/28 (64%)
Frame = +1
Query: 166 RGSSRQNVRPNKRRFSRRAPESGSGRKS 249
R +SR N RPN R F RAP + GR++
Sbjct: 228 RPNSRFNNRPNNRNFLARAPPT-QGRQN 254
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,828,150
Number of Sequences: 59808
Number of extensions: 285078
Number of successful extensions: 613
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 582
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 608
length of database: 16,821,457
effective HSP length: 76
effective length of database: 12,276,049
effective search space used: 969807871
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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