Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--1408
(468 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z81485-1|CAB03975.1| 403|Caenorhabditis elegans Hypothetical pr... 107 4e-24
U56963-9|AAB38126.2| 404|Caenorhabditis elegans Temporarily ass... 106 9e-24
U41009-4|AAA82280.1| 404|Caenorhabditis elegans Hypothetical pr... 106 9e-24
U41009-2|AAA82279.1| 404|Caenorhabditis elegans Hypothetical pr... 106 9e-24
U41009-7|AAN84884.1| 51|Caenorhabditis elegans Hypothetical pr... 73 1e-13
U41009-5|AAO44915.1| 173|Caenorhabditis elegans Hypothetical pr... 73 1e-13
AL110479-11|CAB54357.1| 363|Caenorhabditis elegans Hypothetical... 73 1e-13
U56963-10|AAM97949.1| 353|Caenorhabditis elegans Temporarily as... 51 5e-07
U41009-3|AAO44916.1| 353|Caenorhabditis elegans Hypothetical pr... 51 5e-07
AL110479-10|CAD56249.1| 345|Caenorhabditis elegans Hypothetical... 46 1e-05
U41009-6|AAK68167.2| 84|Caenorhabditis elegans Hypothetical pr... 42 2e-04
AF039043-1|AAB94194.1| 5105|Caenorhabditis elegans Hypothetical ... 28 3.8
Z72508-1|CAA96641.1| 342|Caenorhabditis elegans Hypothetical pr... 27 8.9
>Z81485-1|CAB03975.1| 403|Caenorhabditis elegans Hypothetical
protein C49F5.1 protein.
Length = 403
Score = 107 bits (257), Expect = 4e-24
Identities = 57/111 (51%), Positives = 69/111 (62%)
Frame = +2
Query: 134 SVFXFTSESVGEGHPDKMCDQISDAFLDAHLNQDPDAKVALKP*LKPVWCFCVAKSHXKL 313
S F FTSESV EGHPDKMCDQISDA LDAHL QDP+AKVA + K + K
Sbjct: 3 SKFLFTSESVSEGHPDKMCDQISDAVLDAHLKQDPNAKVACETVTKTGMVMLCGEITSKA 62
Query: 314 TWIIKKLCAKRSNILVMMXPSKGLDYKTCSVMLALXQQSPNIAAGVHDNRN 466
+ L + + S G D+KTC+V++AL QQSP IAAGVH N++
Sbjct: 63 VVDYQVLVRRVIEKIGFTDSSIGFDHKTCNVLVALEQQSPEIAAGVHVNKD 113
>U56963-9|AAB38126.2| 404|Caenorhabditis elegans Temporarily
assigned gene nameprotein 32, isoform a protein.
Length = 404
Score = 106 bits (254), Expect = 9e-24
Identities = 57/109 (52%), Positives = 67/109 (61%)
Frame = +2
Query: 140 FXFTSESVGEGHPDKMCDQISDAFLDAHLNQDPDAKVALKP*LKPVWCFCVAKSHXKLTW 319
F FTSESV EGHPDKMCDQISDA LDAHL QDP AKVA + K + K
Sbjct: 6 FLFTSESVSEGHPDKMCDQISDAVLDAHLAQDPHAKVACETVTKTGMIMLCGEITSKAVV 65
Query: 320 IIKKLCAKRSNILVMMXPSKGLDYKTCSVMLALXQQSPNIAAGVHDNRN 466
+ L + SKG DYKTC+V++AL QQSP IAAGVH +++
Sbjct: 66 DYQVLVRNVIKKIGYDDSSKGFDYKTCNVLVALEQQSPEIAAGVHVDKD 114
>U41009-4|AAA82280.1| 404|Caenorhabditis elegans Hypothetical
protein C06E7.1a protein.
Length = 404
Score = 106 bits (254), Expect = 9e-24
Identities = 57/109 (52%), Positives = 67/109 (61%)
Frame = +2
Query: 140 FXFTSESVGEGHPDKMCDQISDAFLDAHLNQDPDAKVALKP*LKPVWCFCVAKSHXKLTW 319
F FTSESV EGHPDKMCDQISDA LDAHL QDP AKVA + K + K
Sbjct: 6 FLFTSESVSEGHPDKMCDQISDAVLDAHLAQDPHAKVACETVTKTGMIMLCGEITSKAVV 65
Query: 320 IIKKLCAKRSNILVMMXPSKGLDYKTCSVMLALXQQSPNIAAGVHDNRN 466
+ L + SKG DYKTC+V++AL QQSP IAAGVH +++
Sbjct: 66 DYQVLVRNVIKKIGYDDSSKGFDYKTCNVLVALEQQSPEIAAGVHVDKD 114
>U41009-2|AAA82279.1| 404|Caenorhabditis elegans Hypothetical
protein C06E7.3a protein.
Length = 404
Score = 106 bits (254), Expect = 9e-24
Identities = 57/109 (52%), Positives = 67/109 (61%)
Frame = +2
Query: 140 FXFTSESVGEGHPDKMCDQISDAFLDAHLNQDPDAKVALKP*LKPVWCFCVAKSHXKLTW 319
F FTSESV EGHPDKMCDQISDA LDAHL QDP AKVA + K + K
Sbjct: 6 FLFTSESVSEGHPDKMCDQISDAVLDAHLAQDPHAKVACETVTKTGMIMLCGEITSKAVV 65
Query: 320 IIKKLCAKRSNILVMMXPSKGLDYKTCSVMLALXQQSPNIAAGVHDNRN 466
+ L + SKG DYKTC+V++AL QQSP IAAGVH +++
Sbjct: 66 DYQVLVRNVIKKIGYDDSSKGFDYKTCNVLVALEQQSPEIAAGVHVDKD 114
>U41009-7|AAN84884.1| 51|Caenorhabditis elegans Hypothetical
protein C06E7.1c protein.
Length = 51
Score = 72.5 bits (170), Expect = 1e-13
Identities = 33/38 (86%), Positives = 33/38 (86%)
Frame = +2
Query: 140 FXFTSESVGEGHPDKMCDQISDAFLDAHLNQDPDAKVA 253
F FTSESV EGHPDKMCDQISDA LDAHL QDP AKVA
Sbjct: 6 FLFTSESVSEGHPDKMCDQISDAVLDAHLAQDPHAKVA 43
>U41009-5|AAO44915.1| 173|Caenorhabditis elegans Hypothetical
protein C06E7.1d protein.
Length = 173
Score = 72.5 bits (170), Expect = 1e-13
Identities = 33/38 (86%), Positives = 33/38 (86%)
Frame = +2
Query: 140 FXFTSESVGEGHPDKMCDQISDAFLDAHLNQDPDAKVA 253
F FTSESV EGHPDKMCDQISDA LDAHL QDP AKVA
Sbjct: 6 FLFTSESVSEGHPDKMCDQISDAVLDAHLAQDPHAKVA 43
Score = 65.3 bits (152), Expect = 2e-11
Identities = 28/48 (58%), Positives = 36/48 (75%)
Frame = +1
Query: 244 KSRIETITKTGMVLLCGEITXKAXVDYQKVVRETVKHIGYDDXXQRLR 387
K ET+TKTGM++LCGEIT KA VDYQ +VR +K IGYDD + ++
Sbjct: 41 KVACETVTKTGMIMLCGEITSKAVVDYQVLVRNVIKKIGYDDSSKGMK 88
>AL110479-11|CAB54357.1| 363|Caenorhabditis elegans Hypothetical
protein Y105C5B.12b protein.
Length = 363
Score = 72.5 bits (170), Expect = 1e-13
Identities = 33/38 (86%), Positives = 33/38 (86%)
Frame = +2
Query: 140 FXFTSESVGEGHPDKMCDQISDAFLDAHLNQDPDAKVA 253
F FTSESV EGHPDKMCDQISDA LDAHL QDP AKVA
Sbjct: 6 FLFTSESVSEGHPDKMCDQISDAVLDAHLAQDPHAKVA 43
Score = 46.4 bits (105), Expect = 1e-05
Identities = 19/29 (65%), Positives = 25/29 (86%)
Frame = +2
Query: 380 GLDYKTCSVMLALXQQSPNIAAGVHDNRN 466
G DYKTC+V++AL QQSP IAAGVH +++
Sbjct: 45 GFDYKTCNVLVALEQQSPEIAAGVHVDKD 73
>U56963-10|AAM97949.1| 353|Caenorhabditis elegans Temporarily
assigned gene nameprotein 32, isoform b protein.
Length = 353
Score = 50.8 bits (116), Expect = 5e-07
Identities = 21/31 (67%), Positives = 25/31 (80%)
Frame = +1
Query: 277 MVLLCGEITXKAXVDYQKVVRETVKHIGYDD 369
M++LCGEIT KA VDYQ +VR +K IGYDD
Sbjct: 1 MIMLCGEITSKAVVDYQVLVRNVIKKIGYDD 31
Score = 50.0 bits (114), Expect = 8e-07
Identities = 21/31 (67%), Positives = 27/31 (87%)
Frame = +2
Query: 374 SKGLDYKTCSVMLALXQQSPNIAAGVHDNRN 466
SKG DYKTC+V++AL QQSP IAAGVH +++
Sbjct: 33 SKGFDYKTCNVLVALEQQSPEIAAGVHVDKD 63
>U41009-3|AAO44916.1| 353|Caenorhabditis elegans Hypothetical
protein C06E7.3b protein.
Length = 353
Score = 50.8 bits (116), Expect = 5e-07
Identities = 21/31 (67%), Positives = 25/31 (80%)
Frame = +1
Query: 277 MVLLCGEITXKAXVDYQKVVRETVKHIGYDD 369
M++LCGEIT KA VDYQ +VR +K IGYDD
Sbjct: 1 MIMLCGEITSKAVVDYQVLVRNVIKKIGYDD 31
Score = 50.0 bits (114), Expect = 8e-07
Identities = 21/31 (67%), Positives = 27/31 (87%)
Frame = +2
Query: 374 SKGLDYKTCSVMLALXQQSPNIAAGVHDNRN 466
SKG DYKTC+V++AL QQSP IAAGVH +++
Sbjct: 33 SKGFDYKTCNVLVALEQQSPEIAAGVHVDKD 63
>AL110479-10|CAD56249.1| 345|Caenorhabditis elegans Hypothetical
protein Y105C5B.12a protein.
Length = 345
Score = 46.4 bits (105), Expect = 1e-05
Identities = 19/29 (65%), Positives = 25/29 (86%)
Frame = +2
Query: 380 GLDYKTCSVMLALXQQSPNIAAGVHDNRN 466
G DYKTC+V++AL QQSP IAAGVH +++
Sbjct: 27 GFDYKTCNVLVALEQQSPEIAAGVHVDKD 55
>U41009-6|AAK68167.2| 84|Caenorhabditis elegans Hypothetical
protein C06E7.1b protein.
Length = 84
Score = 42.3 bits (95), Expect = 2e-04
Identities = 17/19 (89%), Positives = 17/19 (89%)
Frame = +2
Query: 140 FXFTSESVGEGHPDKMCDQ 196
F FTSESV EGHPDKMCDQ
Sbjct: 6 FLFTSESVSEGHPDKMCDQ 24
>AF039043-1|AAB94194.1| 5105|Caenorhabditis elegans Hypothetical
protein F39C12.1 protein.
Length = 5105
Score = 27.9 bits (59), Expect = 3.8
Identities = 18/58 (31%), Positives = 26/58 (44%), Gaps = 7/58 (12%)
Frame = -3
Query: 466 ISVIMHPSSNVW*LLVXCEHHTACLV----I*AFGXX---HHNQYV*PFRAQLFDNPR 314
I ++ HP + ++ H CL+ I F HHNQYV P +FD P+
Sbjct: 1684 ICIVCHPDTTIFRCTNIVNLHEPCLICGNNIYKFSCSNYEHHNQYVTPI-ISIFDQPK 1740
>Z72508-1|CAA96641.1| 342|Caenorhabditis elegans Hypothetical
protein F28H7.1 protein.
Length = 342
Score = 26.6 bits (56), Expect = 8.9
Identities = 16/66 (24%), Positives = 30/66 (45%)
Frame = -3
Query: 364 HNQYV*PFRAQLFDNPRXLXM*FRHTKAPYRF*LWFQCDFCVRILIQVRV*KSVAYLVAH 185
++Q++ FR L + H+ YRF + F F R + + S+ YL+ H
Sbjct: 87 YHQFIIAFRCSLISGAYAVL----HSHFLYRFFVLFNNQFLTRWFMPYGLLTSIFYLIFH 142
Query: 184 FVWMTL 167
++ T+
Sbjct: 143 VIFWTI 148
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,821,681
Number of Sequences: 27780
Number of extensions: 207118
Number of successful extensions: 457
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 436
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 449
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 839684522
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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