Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--1408
(468 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g02500.2 68414.m00201 S-adenosylmethionine synthetase 1 (SAM1... 94 5e-20
At1g02500.1 68414.m00200 S-adenosylmethionine synthetase 1 (SAM1... 94 5e-20
At4g01850.1 68417.m00242 S-adenosylmethionine synthetase 2 (SAM2... 93 6e-20
At3g17390.1 68416.m02222 S-adenosylmethionine synthetase, putati... 91 3e-19
At2g36880.1 68415.m04521 S-adenosylmethionine synthetase, putati... 88 2e-18
At3g16230.1 68416.m02048 expressed protein similar to ASC-1 comp... 29 2.1
At5g58330.3 68418.m07302 malate dehydrogenase [NADP], chloroplas... 27 4.8
At5g58330.2 68418.m07304 malate dehydrogenase [NADP], chloroplas... 27 4.8
At5g58330.1 68418.m07303 malate dehydrogenase [NADP], chloroplas... 27 4.8
At5g62540.1 68418.m07849 ubiquitin-conjugating enzyme 3 (UBC3) E... 27 8.4
At5g40450.1 68418.m04905 expressed protein 27 8.4
>At1g02500.2 68414.m00201 S-adenosylmethionine synthetase 1 (SAM1)
identical to S-adenosylmethionine synthetase 1
(Methionine adenosyltransferase 1, AdoMet synthetase 1)
[Arabidopsis thaliana] SWISS-PROT:P23686
Length = 393
Score = 93.9 bits (223), Expect = 5e-20
Identities = 49/105 (46%), Positives = 61/105 (58%)
Frame = +2
Query: 140 FXFTSESVGEGHPDKMCDQISDAFLDAHLNQDPDAKVALKP*LKPVWCFCVAKSHXKLTW 319
F FTSESV EGHPDK+CDQISDA LDA L QDPD+KVA + K + K T
Sbjct: 4 FLFTSESVNEGHPDKLCDQISDAVLDACLEQDPDSKVACETCTKTNMVMVFGEITTKATV 63
Query: 320 IIKKLCAKRSNILVMMXPSKGLDYKTCSVMLALXQQSPNIAAGVH 454
+K+ + + GLD C V++ + QQSP+IA GVH
Sbjct: 64 DYEKIVRDTCRAIGFVSDDVGLDADKCKVLVNIEQQSPDIAQGVH 108
>At1g02500.1 68414.m00200 S-adenosylmethionine synthetase 1 (SAM1)
identical to S-adenosylmethionine synthetase 1
(Methionine adenosyltransferase 1, AdoMet synthetase 1)
[Arabidopsis thaliana] SWISS-PROT:P23686
Length = 393
Score = 93.9 bits (223), Expect = 5e-20
Identities = 49/105 (46%), Positives = 61/105 (58%)
Frame = +2
Query: 140 FXFTSESVGEGHPDKMCDQISDAFLDAHLNQDPDAKVALKP*LKPVWCFCVAKSHXKLTW 319
F FTSESV EGHPDK+CDQISDA LDA L QDPD+KVA + K + K T
Sbjct: 4 FLFTSESVNEGHPDKLCDQISDAVLDACLEQDPDSKVACETCTKTNMVMVFGEITTKATV 63
Query: 320 IIKKLCAKRSNILVMMXPSKGLDYKTCSVMLALXQQSPNIAAGVH 454
+K+ + + GLD C V++ + QQSP+IA GVH
Sbjct: 64 DYEKIVRDTCRAIGFVSDDVGLDADKCKVLVNIEQQSPDIAQGVH 108
>At4g01850.1 68417.m00242 S-adenosylmethionine synthetase 2 (SAM2)
identical to S-adenosylmethionine synthetase 2
(Methionine adenosyltransferase 2, AdoMet synthetase 2)
[Arabidopsis thaliana] SWISS-PROT:P17562
Length = 393
Score = 93.5 bits (222), Expect = 6e-20
Identities = 49/105 (46%), Positives = 61/105 (58%)
Frame = +2
Query: 140 FXFTSESVGEGHPDKMCDQISDAFLDAHLNQDPDAKVALKP*LKPVWCFCVAKSHXKLTW 319
F FTSESV EGHPDK+CDQISDA LDA L QDPD+KVA + K + K T
Sbjct: 4 FLFTSESVNEGHPDKLCDQISDAVLDACLEQDPDSKVACETCTKTNMVMVFGEITTKATI 63
Query: 320 IIKKLCAKRSNILVMMXPSKGLDYKTCSVMLALXQQSPNIAAGVH 454
+K+ + + GLD C V++ + QQSP+IA GVH
Sbjct: 64 DYEKIVRDTCRSIGFISDDVGLDADKCKVLVNIEQQSPDIAQGVH 108
>At3g17390.1 68416.m02222 S-adenosylmethionine synthetase, putative
similar to S-adenosylmethionine synthetase 2 (Methionine
adenosyltransferase 2, AdoMet synthetase 2)
[Catharanthus roseus] SWISS-PROT:Q96552
Length = 393
Score = 91.1 bits (216), Expect = 3e-19
Identities = 47/105 (44%), Positives = 61/105 (58%)
Frame = +2
Query: 140 FXFTSESVGEGHPDKMCDQISDAFLDAHLNQDPDAKVALKP*LKPVWCFCVAKSHXKLTW 319
F FTSESV EGHPDK+CDQISDA LDA L QDP++KVA + K + K
Sbjct: 4 FLFTSESVNEGHPDKLCDQISDAILDACLEQDPESKVACETCTKTNMVMVFGEITTKANV 63
Query: 320 IIKKLCAKRSNILVMMXPSKGLDYKTCSVMLALXQQSPNIAAGVH 454
+++ K + + GLD C V++ + QQSP+IA GVH
Sbjct: 64 DYEQIVRKTCREIGFVSADVGLDADNCKVLVNIEQQSPDIAQGVH 108
>At2g36880.1 68415.m04521 S-adenosylmethionine synthetase, putative
similar to S-adenosylmethionine synthetase 3 (Methionine
adenosyltransferase 3, AdoMet synthetase 3)
[Lycopersicon esculentum] SWISS-PROT:P43282
Length = 390
Score = 88.2 bits (209), Expect = 2e-18
Identities = 49/107 (45%), Positives = 65/107 (60%), Gaps = 2/107 (1%)
Frame = +2
Query: 140 FXFTSESVGEGHPDKMCDQISDAFLDAHLNQDPDAKVALKP*LKP--VWCFCVAKSHXKL 313
F FTSESV EGHPDK+CDQISDA LDA L QDP++KVA + K V F + K+
Sbjct: 4 FLFTSESVNEGHPDKLCDQISDAILDACLEQDPESKVACETCTKTNMVMVFGEITTAAKV 63
Query: 314 TWIIKKLCAKRSNILVMMXPSKGLDYKTCSVMLALXQQSPNIAAGVH 454
+ +K+ + + GLD C+V++ + QQSP+IA GVH
Sbjct: 64 DY--EKIVRSTCREIGFISADVGLDADKCNVLVNIEQQSPDIAQGVH 108
>At3g16230.1 68416.m02048 expressed protein similar to ASC-1 complex
subunit P50 (GI:12061189) [Homo sapiens]
Length = 449
Score = 28.7 bits (61), Expect = 2.1
Identities = 16/36 (44%), Positives = 22/36 (61%), Gaps = 1/36 (2%)
Frame = +2
Query: 155 ESVG-EGHPDKMCDQISDAFLDAHLNQDPDAKVALK 259
E +G EG + C I+DAF+ A L + DAK +LK
Sbjct: 340 EEIGDEGRLLRACQVITDAFVKAGLVLEKDAKQSLK 375
>At5g58330.3 68418.m07302 malate dehydrogenase [NADP], chloroplast,
putative strong similiarity to chloroplast
NADP-dependent malate dehydrogenase (EC 1.1.1.82)
SP|O48902 {Medicago sativa}, SP|P21528 {Pisum sativum},
SP|Q05145 {Mesembryanthemum crystallinum}, SP|P46489
{Flaveria bidentis}, [Flaveria trinervia] GI:726334,
SP|P17606I {Sorghum bicolor}; contains InterPro entry
IPR001236: Lactate/malate dehydrogenase
Length = 334
Score = 27.5 bits (58), Expect = 4.8
Identities = 15/49 (30%), Positives = 24/49 (48%)
Frame = +2
Query: 68 PETSKMNGYAKTNGHSYDMEDGSVFXFTSESVGEGHPDKMCDQISDAFL 214
PE + T+G+ Y +E+G VF S G+G + + D D +L
Sbjct: 244 PEGDWFSTGVYTDGNPYGIEEGLVFSMPCRSKGDGDYELVKDVEIDDYL 292
>At5g58330.2 68418.m07304 malate dehydrogenase [NADP], chloroplast,
putative strong similiarity to chloroplast
NADP-dependent malate dehydrogenase (EC 1.1.1.82)
SP|O48902 {Medicago sativa}, SP|P21528 {Pisum sativum},
SP|Q05145 {Mesembryanthemum crystallinum}, SP|P46489
{Flaveria bidentis}, [Flaveria trinervia] GI:726334,
SP|P17606I {Sorghum bicolor}; contains InterPro entry
IPR001236: Lactate/malate dehydrogenase
Length = 442
Score = 27.5 bits (58), Expect = 4.8
Identities = 15/49 (30%), Positives = 24/49 (48%)
Frame = +2
Query: 68 PETSKMNGYAKTNGHSYDMEDGSVFXFTSESVGEGHPDKMCDQISDAFL 214
PE + T+G+ Y +E+G VF S G+G + + D D +L
Sbjct: 352 PEGDWFSTGVYTDGNPYGIEEGLVFSMPCRSKGDGDYELVKDVEIDDYL 400
>At5g58330.1 68418.m07303 malate dehydrogenase [NADP], chloroplast,
putative strong similiarity to chloroplast
NADP-dependent malate dehydrogenase (EC 1.1.1.82)
SP|O48902 {Medicago sativa}, SP|P21528 {Pisum sativum},
SP|Q05145 {Mesembryanthemum crystallinum}, SP|P46489
{Flaveria bidentis}, [Flaveria trinervia] GI:726334,
SP|P17606I {Sorghum bicolor}; contains InterPro entry
IPR001236: Lactate/malate dehydrogenase
Length = 443
Score = 27.5 bits (58), Expect = 4.8
Identities = 15/49 (30%), Positives = 24/49 (48%)
Frame = +2
Query: 68 PETSKMNGYAKTNGHSYDMEDGSVFXFTSESVGEGHPDKMCDQISDAFL 214
PE + T+G+ Y +E+G VF S G+G + + D D +L
Sbjct: 353 PEGDWFSTGVYTDGNPYGIEEGLVFSMPCRSKGDGDYELVKDVEIDDYL 401
>At5g62540.1 68418.m07849 ubiquitin-conjugating enzyme 3 (UBC3) E2;
identical to gi:431261, SP:P42746
Length = 150
Score = 26.6 bits (56), Expect = 8.4
Identities = 14/34 (41%), Positives = 16/34 (47%)
Frame = -2
Query: 296 SPHKSTIPVLVMVSMRLLRPDPDSGARLEKRRLF 195
SP VL + L P+PDS A E RLF
Sbjct: 97 SPIYDVAAVLTSIQSLLCDPNPDSPANAEAARLF 130
>At5g40450.1 68418.m04905 expressed protein
Length = 2910
Score = 26.6 bits (56), Expect = 8.4
Identities = 13/31 (41%), Positives = 19/31 (61%)
Frame = +2
Query: 125 EDGSVFXFTSESVGEGHPDKMCDQISDAFLD 217
E+ S+ T ESVGE P + D+I DA ++
Sbjct: 1955 EERSISVETEESVGETKPKEHEDEIRDAHVE 1985
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,273,731
Number of Sequences: 28952
Number of extensions: 197385
Number of successful extensions: 482
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 470
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 475
length of database: 12,070,560
effective HSP length: 75
effective length of database: 9,899,160
effective search space used: 791932800
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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