Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1407
         (595 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1565.08 |cdc48|SPAC6F12.01|AAA family ATPase Cdc48|Schizosac...   103   2e-23
SPAC5D6.01 |rps2202|rps22-2, rps15a-2|40S ribosomal protein S15a...    29   0.68 
SPAC22A12.04c |rps2201|rps22-1, rps15a-1|40S ribosomal protein S...    29   0.68 
SPAC4D7.02c |||glycerophosphoryl diester phosphodiesterase |Schi...    28   0.89 
SPAC19G12.07c |rsd1||RNA-binding protein Rsd1|Schizosaccharomyce...    28   1.2  
SPCC285.10c |||SPRY domain protein|Schizosaccharomyces pombe|chr...    28   1.2  
SPAC12G12.01c ||SPAC630.02|ubiquitin-protein ligase E3|Schizosac...    28   1.2  
SPBC428.15 |||GTP binding protein|Schizosaccharomyces pombe|chr ...    26   4.8  
SPCC645.06c |rgf3|lad1|RhoGEF Rgf3|Schizosaccharomyces pombe|chr...    26   4.8  
SPAC1782.01 ||SPAPYUG7.07|proteasome component|Schizosaccharomyc...    25   8.3  
SPAC17A5.14 |exo2||exonuclease II Exo2 |Schizosaccharomyces pomb...    25   8.3  

>SPAC1565.08 |cdc48|SPAC6F12.01|AAA family ATPase
           Cdc48|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 815

 Score =  103 bits (247), Expect = 2e-23
 Identities = 45/88 (51%), Positives = 62/88 (70%)
 Frame = +1

Query: 244 LAQGKRRKETVCIVLSDDNCPDEKIRMXXXXXXXXXXXXSDVVSIAPCPSVKYGKRVHIL 423
           + +GKRRK+TV IVL+D+   D   R+             D+V+I PCP +KY +R+ +L
Sbjct: 78  VVKGKRRKDTVLIVLTDEEMEDGVARINRVVRNNLRVRLGDIVTINPCPDIKYAERISVL 137

Query: 424 PIDDSVEGLTGNLFEVYLKPYFMEAYRP 507
           P+ D+VEGLTG+LF+VYLKPYF+EAYRP
Sbjct: 138 PLADTVEGLTGSLFDVYLKPYFVEAYRP 165



 Score = 73.7 bits (173), Expect = 2e-14
 Identities = 34/60 (56%), Positives = 45/60 (75%)
 Frame = +2

Query: 74  NKMADNKSPDDLSTAILRRKDRPNRLIVEEAVSDDNSVVALSQAKMEQLQLFRGDTVLLK 253
           N   D  S +D +TAILR+K +PN L+V++A +DDNSV+ LS   ME LQLFRGDTV++K
Sbjct: 21  NPPKDTYSAEDTATAILRKKRKPNSLVVDDATNDDNSVITLSSNTMETLQLFRGDTVVVK 80



 Score = 28.7 bits (61), Expect = 0.68
 Identities = 12/22 (54%), Positives = 14/22 (63%)
 Frame = +3

Query: 525 FMVRGGMRAAXFKVVETDPSPF 590
           F+VRG MR   FKVV+  P  F
Sbjct: 172 FVVRGSMRQVEFKVVDVAPDEF 193


>SPAC5D6.01 |rps2202|rps22-2, rps15a-2|40S ribosomal protein
           S15a|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 130

 Score = 28.7 bits (61), Expect = 0.68
 Identities = 11/27 (40%), Positives = 19/27 (70%), Gaps = 3/27 (11%)
 Frame = -1

Query: 442 QLNHQLAVCGLV---FHISLKDTERWI 371
           QLN ++  CG++   F++ LKD E+W+
Sbjct: 64  QLNGRINKCGVISPRFNVKLKDIEKWV 90


>SPAC22A12.04c |rps2201|rps22-1, rps15a-1|40S ribosomal protein
           S15a|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 130

 Score = 28.7 bits (61), Expect = 0.68
 Identities = 11/27 (40%), Positives = 19/27 (70%), Gaps = 3/27 (11%)
 Frame = -1

Query: 442 QLNHQLAVCGLV---FHISLKDTERWI 371
           QLN ++  CG++   F++ LKD E+W+
Sbjct: 64  QLNGRINKCGVISPRFNVKLKDIEKWV 90


>SPAC4D7.02c |||glycerophosphoryl diester phosphodiesterase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 319

 Score = 28.3 bits (60), Expect = 0.89
 Identities = 12/39 (30%), Positives = 20/39 (51%), Gaps = 1/39 (2%)
 Frame = +3

Query: 99  LMIYRPRSSVARTDPTVSLSKKQSAMTTQSWH-FHRPKW 212
           L + R    +   DP ++ +  Q  + T+SWH FH  +W
Sbjct: 259 LALIRGCDGLLSDDPVMARALSQGPIVTKSWHYFHYSEW 297


>SPAC19G12.07c |rsd1||RNA-binding protein Rsd1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 604

 Score = 27.9 bits (59), Expect = 1.2
 Identities = 17/44 (38%), Positives = 24/44 (54%)
 Frame = +3

Query: 135 TDPTVSLSKKQSAMTTQSWHFHRPKWSNFNSSVVTQSCSRQTPQ 266
           T P VS+  + +  + QS  F R   S +N  VVT S S +TP+
Sbjct: 74  TPPPVSMGYRYARSSKQS--FQRED-SGYNDDVVTNSSSHRTPR 114


>SPCC285.10c |||SPRY domain protein|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 382

 Score = 27.9 bits (59), Expect = 1.2
 Identities = 21/77 (27%), Positives = 35/77 (45%), Gaps = 2/77 (2%)
 Frame = +3

Query: 48  FLDSNNKF*IKWQIIKALMIYRPRSSVARTDPTVS--LSKKQSAMTTQSWHFHRPKWSNF 221
           F+++N K   KW++  A+    P  S + + PT+S   + + SA TT     +RP  S  
Sbjct: 286 FIEANIK---KWRLAPAVGSLAPPPSYSTSQPTISWDAASESSAGTTTQGDTNRPDKSKN 342

Query: 222 NSSVVTQSCSRQTPQGN 272
            S  +    +     GN
Sbjct: 343 RSPPINFDGTSYDAAGN 359


>SPAC12G12.01c ||SPAC630.02|ubiquitin-protein ligase
           E3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 905

 Score = 27.9 bits (59), Expect = 1.2
 Identities = 14/38 (36%), Positives = 20/38 (52%), Gaps = 1/38 (2%)
 Frame = -1

Query: 412 LVFHISLKDTERWIP-HQKDAHEGCFSQHGSSEFSHQG 302
           LV  + LKD   WI    + + E  F   G ++FS+QG
Sbjct: 435 LVSDLYLKDLWSWIHLSHRQSEESLFGDTGDTDFSYQG 472


>SPBC428.15 |||GTP binding protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 409

 Score = 25.8 bits (54), Expect = 4.8
 Identities = 11/27 (40%), Positives = 19/27 (70%), Gaps = 1/27 (3%)
 Frame = +2

Query: 98  PD-DLSTAILRRKDRPNRLIVEEAVSD 175
           PD D + + + RK+ PNRL++  A+S+
Sbjct: 233 PDADANISKIARKEDPNRLVLASAISE 259


>SPCC645.06c |rgf3|lad1|RhoGEF Rgf3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1275

 Score = 25.8 bits (54), Expect = 4.8
 Identities = 14/53 (26%), Positives = 30/53 (56%)
 Frame = +2

Query: 71  LNKMADNKSPDDLSTAILRRKDRPNRLIVEEAVSDDNSVVALSQAKMEQLQLF 229
           L  +A N   + L+T   +RK + N  ++ +A ++ N+  +++ A  E+ QL+
Sbjct: 768 LGSLAGNLPQESLTTKS-KRKSKVNLELMFDATAEKNNENSMNSAVFEKSQLY 819


>SPAC1782.01 ||SPAPYUG7.07|proteasome component|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1679

 Score = 25.0 bits (52), Expect = 8.3
 Identities = 12/50 (24%), Positives = 24/50 (48%), Gaps = 3/50 (6%)
 Frame = +3

Query: 447  SYWQSIRSILEAVLHGGLPSDHRDXTFMVRGGMRAAXFKVV---ETDPSP 587
            S WQ+ + +   + + G+P D +  TF       ++  K +   + DP+P
Sbjct: 992  SLWQARKGLASGISYLGIPEDQKRKTFSFDTSKSSSLLKKLYRFKHDPNP 1041


>SPAC17A5.14 |exo2||exonuclease II Exo2 |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1328

 Score = 25.0 bits (52), Expect = 8.3
 Identities = 13/27 (48%), Positives = 17/27 (62%), Gaps = 2/27 (7%)
 Frame = +1

Query: 511  IVTTP-SWFAGACAPPSSK-WSKQIHH 585
            +VT P S F    +PPSS  W+K+ HH
Sbjct: 1232 LVTKPTSTFPSPPSPPSSSVWNKREHH 1258


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,501,334
Number of Sequences: 5004
Number of extensions: 48875
Number of successful extensions: 154
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 149
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 154
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 258201856
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)