Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--1407
(595 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_01_0364 - 2834446-2834742,2834838-2835197,2835281-2835562,283... 126 1e-29
10_08_0170 + 15397381-15397418,15397519-15397681,15398419-153986... 122 3e-28
08_02_0657 - 19749835-19751942,19753123-19753561 99 1e-21
03_05_0754 + 27452203-27452242,27452360-27455611,27456480-274565... 30 1.2
07_03_0500 - 18798893-18799893,18801616-18801701,18801742-188018... 30 1.6
06_01_0057 - 483710-484309 29 2.8
07_03_0501 - 18820554-18821548,18821960-18822182 28 4.9
02_02_0704 + 13095449-13095584,13095671-13095990,13096102-130964... 28 4.9
01_01_0037 - 281681-281785,282559-282924 28 4.9
09_06_0013 - 20227302-20227325,20227811-20227834,20228111-202282... 27 8.5
>03_01_0364 -
2834446-2834742,2834838-2835197,2835281-2835562,
2835634-2835705,2835798-2836019,2836105-2836871,
2837206-2837434,2838027-2838189,2838313-2838350
Length = 809
Score = 126 bits (305), Expect = 1e-29
Identities = 55/88 (62%), Positives = 67/88 (76%)
Frame = +1
Query: 244 LAQGKRRKETVCIVLSDDNCPDEKIRMXXXXXXXXXXXXSDVVSIAPCPSVKYGKRVHIL 423
L +GK+RK+T+CIVL+DD C + KIRM DVVS+ CP VKYGKRVHIL
Sbjct: 65 LLKGKKRKDTICIVLADDTCEEPKIRMNKVVRKNLRVRLGDVVSVHQCPDVKYGKRVHIL 124
Query: 424 PIDDSVEGLTGNLFEVYLKPYFMEAYRP 507
PIDD+VEG+TGNLF+ +LKPYF+EAYRP
Sbjct: 125 PIDDTVEGITGNLFDAFLKPYFLEAYRP 152
Score = 76.2 bits (179), Expect = 2e-14
Identities = 36/57 (63%), Positives = 43/57 (75%)
Frame = +2
Query: 83 ADNKSPDDLSTAILRRKDRPNRLIVEEAVSDDNSVVALSQAKMEQLQLFRGDTVLLK 253
+D K D STAIL RK PNRL+V+EA +DDNSV+ + ME+LQLFRGDTVLLK
Sbjct: 11 SDPKGKKDFSTAILERKKSPNRLVVDEATNDDNSVIGMHPDTMEKLQLFRGDTVLLK 67
Score = 41.1 bits (92), Expect = 6e-04
Identities = 15/23 (65%), Positives = 20/23 (86%)
Frame = +3
Query: 525 FMVRGGMRAAXFKVVETDPSPFC 593
F+VRGGMR+ FKV+ETDP+ +C
Sbjct: 159 FLVRGGMRSVEFKVIETDPAEYC 181
>10_08_0170 +
15397381-15397418,15397519-15397681,15398419-15398647,
15398777-15399543,15399650-15399871,15399961-15400032,
15400100-15400408,15400491-15400850,15401199-15401492
Length = 817
Score = 122 bits (293), Expect = 3e-28
Identities = 53/88 (60%), Positives = 66/88 (75%)
Frame = +1
Query: 244 LAQGKRRKETVCIVLSDDNCPDEKIRMXXXXXXXXXXXXSDVVSIAPCPSVKYGKRVHIL 423
L +GK+RK+T+CIVL+D+ C + KIRM DVVS+ C VKYGKRVHIL
Sbjct: 65 LLKGKKRKDTICIVLADETCEEPKIRMNKVVRKNLRVRLGDVVSVHQCQDVKYGKRVHIL 124
Query: 424 PIDDSVEGLTGNLFEVYLKPYFMEAYRP 507
PIDD+VEG+TGNLF+ +LKPYF+EAYRP
Sbjct: 125 PIDDTVEGITGNLFDAFLKPYFLEAYRP 152
Score = 79.8 bits (188), Expect = 2e-15
Identities = 40/57 (70%), Positives = 44/57 (77%)
Frame = +2
Query: 83 ADNKSPDDLSTAILRRKDRPNRLIVEEAVSDDNSVVALSQAKMEQLQLFRGDTVLLK 253
AD K D STAIL RK PNRL+V+EA +DDNSVVAL ME+LQLFRGDTVLLK
Sbjct: 11 ADPKGKKDYSTAILERKKSPNRLVVDEATNDDNSVVALHPDTMERLQLFRGDTVLLK 67
Score = 41.1 bits (92), Expect = 6e-04
Identities = 15/23 (65%), Positives = 20/23 (86%)
Frame = +3
Query: 525 FMVRGGMRAAXFKVVETDPSPFC 593
F+VRGGMR+ FKV+ETDP+ +C
Sbjct: 159 FLVRGGMRSVEFKVIETDPTEYC 181
>08_02_0657 - 19749835-19751942,19753123-19753561
Length = 848
Score = 99 bits (238), Expect = 1e-21
Identities = 40/86 (46%), Positives = 59/86 (68%)
Frame = +1
Query: 250 QGKRRKETVCIVLSDDNCPDEKIRMXXXXXXXXXXXXSDVVSIAPCPSVKYGKRVHILPI 429
+G+RR+E VC D++CPD ++R+ D+V++ PCP+++ KRV + P
Sbjct: 70 RGRRRREAVCYAQKDESCPDGRLRLSRGVRSNLHVRLGDLVTVKPCPTIRNAKRVQLRPF 129
Query: 430 DDSVEGLTGNLFEVYLKPYFMEAYRP 507
DDSVEG++G+LFE YLKPYFM+A RP
Sbjct: 130 DDSVEGISGDLFEPYLKPYFMDALRP 155
Score = 52.4 bits (120), Expect = 3e-07
Identities = 30/61 (49%), Positives = 40/61 (65%), Gaps = 5/61 (8%)
Frame = +2
Query: 104 DLSTAILR--RKDRPNRLIVEEA---VSDDNSVVALSQAKMEQLQLFRGDTVLLKANAAR 268
D STAIL +K PNRL+ ++A V+ DNS V LS+A ME+L +FRGD V L+ R
Sbjct: 16 DYSTAILECAKKKSPNRLMADDAEGGVAVDNSTVTLSEATMEELGIFRGDLVTLRGRRRR 75
Query: 269 K 271
+
Sbjct: 76 E 76
Score = 29.1 bits (62), Expect = 2.8
Identities = 11/20 (55%), Positives = 16/20 (80%)
Frame = +3
Query: 525 FMVRGGMRAAXFKVVETDPS 584
F+VRG M A FKV++T+P+
Sbjct: 162 FLVRGHMHAVEFKVMDTEPN 181
>03_05_0754 + 27452203-27452242,27452360-27455611,27456480-27456533,
27456774-27456872,27456948-27457012,27457476-27457575,
27458326-27458408,27458494-27458569,27458920-27459698
Length = 1515
Score = 30.3 bits (65), Expect = 1.2
Identities = 19/59 (32%), Positives = 29/59 (49%), Gaps = 1/59 (1%)
Frame = +2
Query: 419 YCQLMIQLRVLLAIYSKYT*-SRTSWRLTVRPS*XHLHGSRGHARRXVQSGRNRSITIL 592
+C+ IQ+ A + ++ S L S HLHG G RR + +GR R+I +L
Sbjct: 1228 FCEKKIQIPPESACFIEFPDESLPHETLQASSSAVHLHGHHGRLRRFLAAGRLRAIDVL 1286
>07_03_0500 -
18798893-18799893,18801616-18801701,18801742-18801805,
18802640-18802853
Length = 454
Score = 29.9 bits (64), Expect = 1.6
Identities = 14/44 (31%), Positives = 24/44 (54%)
Frame = +2
Query: 152 IVEEAVSDDNSVVALSQAKMEQLQLFRGDTVLLKANAARKPFAS 283
++EEA+ DN +A S+ + + G TV+ N R+ FA+
Sbjct: 377 LIEEALGLDNGAMAASRQVLREYGNMSGTTVIFVLNELRRRFAA 420
>06_01_0057 - 483710-484309
Length = 199
Score = 29.1 bits (62), Expect = 2.8
Identities = 17/50 (34%), Positives = 23/50 (46%), Gaps = 1/50 (2%)
Frame = +3
Query: 108 YRPRSSVARTDPTVSLSKKQSAMTTQS-WHFHRPKWSNFNSSVVTQSCSR 254
Y P ART P ++ + A S W F WS+ S V+T+ SR
Sbjct: 62 YFPLGPAARTSPAGTVLCFEDARGGDSTWRFRYSYWSSSQSYVITKGWSR 111
>07_03_0501 - 18820554-18821548,18821960-18822182
Length = 405
Score = 28.3 bits (60), Expect = 4.9
Identities = 13/44 (29%), Positives = 23/44 (52%)
Frame = +2
Query: 152 IVEEAVSDDNSVVALSQAKMEQLQLFRGDTVLLKANAARKPFAS 283
++EEA+ DN +A S+ + + G TV+ N R+ F +
Sbjct: 328 LIEEALGLDNGAMAASRQVLREYGNMSGTTVIFVLNELRRRFVA 371
>02_02_0704 +
13095449-13095584,13095671-13095990,13096102-13096423,
13096556-13096632,13096744-13097127
Length = 412
Score = 28.3 bits (60), Expect = 4.9
Identities = 14/43 (32%), Positives = 24/43 (55%)
Frame = +1
Query: 439 VEGLTGNLFEVYLKPYFMEAYRPTIVTTPSWFAGACAPPSSKW 567
V+GLT + + +L+ Y + RP+ S AG APP+ ++
Sbjct: 272 VDGLTNDEVKSHLQKYRLHTRRPSSTGQSSAAAGVPAPPAPQF 314
>01_01_0037 - 281681-281785,282559-282924
Length = 156
Score = 28.3 bits (60), Expect = 4.9
Identities = 12/32 (37%), Positives = 16/32 (50%)
Frame = +1
Query: 487 FMEAYRPTIVTTPSWFAGACAPPSSKWSKQIH 582
F EA+ PT+ AGA A P W K ++
Sbjct: 75 FAEAFLPTLTAADFLRAGATAKPHKSWRKLLY 106
>09_06_0013 -
20227302-20227325,20227811-20227834,20228111-20228219,
20228346-20228470,20229427-20229576,20229621-20229685,
20229808-20229952
Length = 213
Score = 27.5 bits (58), Expect = 8.5
Identities = 9/25 (36%), Positives = 13/25 (52%)
Frame = -1
Query: 307 QGNYRLRARCKRFPCGVCLEQDCVT 233
+ Y+ R + R PC C DC+T
Sbjct: 167 KSTYKSRQKLIRLPCSHCYHADCIT 191
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,823,853
Number of Sequences: 37544
Number of extensions: 339746
Number of successful extensions: 844
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 824
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 844
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1411925004
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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