Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1407
         (595 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_45627| Best HMM Match : AAA (HMM E-Value=0)                         87   8e-18
SB_14233| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.7  

>SB_45627| Best HMM Match : AAA (HMM E-Value=0)
          Length = 628

 Score = 87.4 bits (207), Expect = 8e-18
 Identities = 40/51 (78%), Positives = 48/51 (94%)
 Frame = +2

Query: 101 DDLSTAILRRKDRPNRLIVEEAVSDDNSVVALSQAKMEQLQLFRGDTVLLK 253
           D+L+TAIL+ K RPNRL+VEEAV+DDNSVV +SQAKME+LQLFRGDTVL+K
Sbjct: 5   DELATAILKNKSRPNRLLVEEAVNDDNSVVTMSQAKMEELQLFRGDTVLIK 55



 Score = 46.8 bits (106), Expect = 1e-05
 Identities = 18/23 (78%), Positives = 21/23 (91%)
 Frame = +3

Query: 525 FMVRGGMRAAXFKVVETDPSPFC 593
           F+VRGGMRA  FKV+ETDPSP+C
Sbjct: 106 FLVRGGMRAVEFKVIETDPSPYC 128



 Score = 45.2 bits (102), Expect = 4e-05
 Identities = 22/43 (51%), Positives = 26/43 (60%)
 Frame = +1

Query: 244 LAQGKRRKETVCIVLSDDNCPDEKIRMXXXXXXXXXXXXSDVV 372
           L +GK+RK+TVCIVLSDD   D+KIRM             DVV
Sbjct: 53  LIKGKKRKDTVCIVLSDDTISDDKIRMNRVVRMNLRVRLGDVV 95


>SB_14233| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 59

 Score = 28.7 bits (61), Expect = 3.7
 Identities = 12/27 (44%), Positives = 14/27 (51%)
 Frame = +1

Query: 499 YRPTIVTTPSWFAGACAPPSSKWSKQI 579
           Y PTI   PS F   C+P   KW K +
Sbjct: 6   YFPTITQNPSNFIKLCSPEVLKWIKSL 32


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,112,318
Number of Sequences: 59808
Number of extensions: 383760
Number of successful extensions: 1036
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 956
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1036
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1427401750
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)