Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1407
         (595 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g03340.1 68418.m00286 cell division cycle protein 48, putativ...   124   4e-29
At3g09840.1 68416.m01174 cell division cycle protein 48 (CDC48A)...   124   4e-29
At3g53230.1 68416.m05865 cell division cycle protein 48, putativ...   119   2e-27
At4g13885.1 68417.m02151 3'-5' exonuclease-related contains weak...    31   0.77 
At3g26630.1 68416.m03328 pentatricopeptide (PPR) repeat-containi...    30   1.0  
At2g23360.1 68415.m02790 transport protein-related contains Pfam...    29   2.3  
At5g10520.1 68418.m01218 protein kinase family protein contains ...    27   7.1  
At5g03630.1 68418.m00322 monodehydroascorbate reductase, putativ...    27   7.1  
At1g67390.1 68414.m07670 F-box family protein contains Pfam PF00...    27   7.1  
At1g49400.1 68414.m05537 ribosomal protein S17 family protein si...    27   7.1  
At1g45231.2 68414.m05189 WW domain-containing protein Since this...    27   9.4  

>At5g03340.1 68418.m00286 cell division cycle protein 48, putative /
           CDC48, putative very strong similarity to SP|P54609 Cell
           division cycle protein 48 homolog {Arabidopsis
           thaliana}; contains Pfam profiles PF00004: ATPase AAA
           family, PF02359: Cell division protein 48 (CDC48)
           N-terminal domain; supporting cDNA
           gi|26449351|dbj|AK117125.1|
          Length = 810

 Score =  124 bits (299), Expect = 4e-29
 Identities = 53/88 (60%), Positives = 66/88 (75%)
 Frame = +1

Query: 244 LAQGKRRKETVCIVLSDDNCPDEKIRMXXXXXXXXXXXXSDVVSIAPCPSVKYGKRVHIL 423
           L +GK+RK+TVCI L+D+ C + KIRM             DV+S+  CP VKYGKRVHIL
Sbjct: 62  LIKGKKRKDTVCIALADETCEEPKIRMNKVVRSNLRVRLGDVISVHQCPDVKYGKRVHIL 121

Query: 424 PIDDSVEGLTGNLFEVYLKPYFMEAYRP 507
           P+DD+VEG+TGNLF+ YLKPYF+EAYRP
Sbjct: 122 PVDDTVEGVTGNLFDAYLKPYFLEAYRP 149



 Score = 80.2 bits (189), Expect = 1e-15
 Identities = 36/57 (63%), Positives = 47/57 (82%)
 Frame = +2

Query: 83  ADNKSPDDLSTAILRRKDRPNRLIVEEAVSDDNSVVALSQAKMEQLQLFRGDTVLLK 253
           +D+K+  D STAIL RK  PNRL+V+EA++DDNSVV+L    ME+LQLFRGDT+L+K
Sbjct: 8   SDSKTKKDFSTAILERKKSPNRLVVDEAINDDNSVVSLHPTTMEKLQLFRGDTILIK 64



 Score = 41.1 bits (92), Expect = 5e-04
 Identities = 15/23 (65%), Positives = 20/23 (86%)
 Frame = +3

Query: 525 FMVRGGMRAAXFKVVETDPSPFC 593
           F+VRGGMR+  FKV+ETDP+ +C
Sbjct: 156 FLVRGGMRSVEFKVIETDPAEYC 178


>At3g09840.1 68416.m01174 cell division cycle protein 48 (CDC48A)
           (CDC48) identical to SP|P54609 Cell division cycle
           protein 48 homolog {Arabidopsis thaliana}
          Length = 809

 Score =  124 bits (299), Expect = 4e-29
 Identities = 53/88 (60%), Positives = 66/88 (75%)
 Frame = +1

Query: 244 LAQGKRRKETVCIVLSDDNCPDEKIRMXXXXXXXXXXXXSDVVSIAPCPSVKYGKRVHIL 423
           L +GK+RK+TVCI L+D+ C + KIRM             DV+S+  CP VKYGKRVHIL
Sbjct: 62  LIKGKKRKDTVCIALADETCEEPKIRMNKVVRSNLRVRLGDVISVHQCPDVKYGKRVHIL 121

Query: 424 PIDDSVEGLTGNLFEVYLKPYFMEAYRP 507
           P+DD+VEG+TGNLF+ YLKPYF+EAYRP
Sbjct: 122 PVDDTVEGVTGNLFDAYLKPYFLEAYRP 149



 Score = 83.0 bits (196), Expect = 1e-16
 Identities = 38/57 (66%), Positives = 48/57 (84%)
 Frame = +2

Query: 83  ADNKSPDDLSTAILRRKDRPNRLIVEEAVSDDNSVVALSQAKMEQLQLFRGDTVLLK 253
           +D+KS  D STAIL RK  PNRL+V+EA++DDNSVV+L  A ME+LQLFRGDT+L+K
Sbjct: 8   SDSKSKKDFSTAILERKKSPNRLVVDEAINDDNSVVSLHPATMEKLQLFRGDTILIK 64



 Score = 41.1 bits (92), Expect = 5e-04
 Identities = 15/23 (65%), Positives = 20/23 (86%)
 Frame = +3

Query: 525 FMVRGGMRAAXFKVVETDPSPFC 593
           F+VRGGMR+  FKV+ETDP+ +C
Sbjct: 156 FLVRGGMRSVEFKVIETDPAEYC 178


>At3g53230.1 68416.m05865 cell division cycle protein 48, putative /
           CDC48, putative very strong similarity to SP|P54609 Cell
           division cycle protein 48 homolog {Arabidopsis
           thaliana}; contains Pfam profiles PF00004: ATPase AAA
           family, PF02359: Cell division protein 48 (CDC48)
           N-terminal domain
          Length = 815

 Score =  119 bits (286), Expect = 2e-27
 Identities = 49/88 (55%), Positives = 65/88 (73%)
 Frame = +1

Query: 244 LAQGKRRKETVCIVLSDDNCPDEKIRMXXXXXXXXXXXXSDVVSIAPCPSVKYGKRVHIL 423
           L +GK+RK+TVCI L+D+ C + KIRM             DV+S+  CP VKYG RVHIL
Sbjct: 63  LIKGKKRKDTVCIALADETCDEPKIRMNKVVRSNLRVRLGDVISVHQCPDVKYGNRVHIL 122

Query: 424 PIDDSVEGLTGNLFEVYLKPYFMEAYRP 507
           P+DD++EG++GN+F+ YLKPYF+EAYRP
Sbjct: 123 PLDDTIEGVSGNIFDAYLKPYFLEAYRP 150



 Score = 70.5 bits (165), Expect = 8e-13
 Identities = 34/58 (58%), Positives = 46/58 (79%), Gaps = 1/58 (1%)
 Frame = +2

Query: 83  ADNK-SPDDLSTAILRRKDRPNRLIVEEAVSDDNSVVALSQAKMEQLQLFRGDTVLLK 253
           +D+K +  D STAIL +K   NRL+V+EA++DDNSVV+L    ME+LQLFRGDT+L+K
Sbjct: 8   SDSKGTKKDFSTAILEKKKAANRLVVDEAINDDNSVVSLHPDTMEKLQLFRGDTILIK 65



 Score = 40.7 bits (91), Expect = 7e-04
 Identities = 15/23 (65%), Positives = 20/23 (86%)
 Frame = +3

Query: 525 FMVRGGMRAAXFKVVETDPSPFC 593
           F+VRGGMR+  FKV+ETDP+ +C
Sbjct: 157 FLVRGGMRSIEFKVIETDPAEYC 179


>At4g13885.1 68417.m02151 3'-5' exonuclease-related contains weak
           similarity to Pfam domain PF01612: 3'-5' exonuclease
          Length = 263

 Score = 30.7 bits (66), Expect = 0.77
 Identities = 13/23 (56%), Positives = 18/23 (78%)
 Frame = -1

Query: 235 TTEELKLLHFGL*KCHD*VVIAD 167
           TTEELK+ H+ L KC D +V+A+
Sbjct: 3   TTEELKISHYKLYKCFDFLVVAN 25


>At3g26630.1 68416.m03328 pentatricopeptide (PPR) repeat-containing
           protein contains Pfam profile: PF01535 PPR repeat
          Length = 455

 Score = 30.3 bits (65), Expect = 1.0
 Identities = 11/32 (34%), Positives = 20/32 (62%)
 Frame = -2

Query: 390 RTRSDGYHIRKTHTKVVSHNTVHPNFLIRAII 295
           RT S+   +++ HTK++ HN  +   L+R +I
Sbjct: 28  RTCSNFSQLKQIHTKIIKHNLTNDQLLVRQLI 59


>At2g23360.1 68415.m02790 transport protein-related contains Pfam
           PF05911: Plant protein of unknown function (DUF869)
           profile; weak similarity to Intracellular protein
           transport protein USO1 (Swiss-Prot:P25386)
           [Saccharomyces cerevisiae]
          Length = 886

 Score = 29.1 bits (62), Expect = 2.3
 Identities = 17/55 (30%), Positives = 30/55 (54%)
 Frame = +2

Query: 143 NRLIVEEAVSDDNSVVALSQAKMEQLQLFRGDTVLLKANAARKPFASCSQTIIAL 307
           +R  VEE  +D  +  + ++ K+E+ Q  R +   L+  AA +  A C +TI+ L
Sbjct: 687 SRKTVEEEANDKTASASENELKLEEKQNMRTE---LEIAAASEKLAECQETILNL 738


>At5g10520.1 68418.m01218 protein kinase family protein contains
           protein kinase domain, INTERPRO:IPR000719
          Length = 467

 Score = 27.5 bits (58), Expect = 7.1
 Identities = 14/49 (28%), Positives = 25/49 (51%), Gaps = 1/49 (2%)
 Frame = +3

Query: 78  KWQIIKALMIYR-PRSSVARTDPTVSLSKKQSAMTTQSWHFHRPKWSNF 221
           ++ +I  L  Y   R ++ R  P   L+  +SA T +++   +P W NF
Sbjct: 95  RFSVIPLLASYELTRKNLRRKQP--KLTPSESAFTCEAFFMAKPSWRNF 141


>At5g03630.1 68418.m00322 monodehydroascorbate reductase, putative
           monodehydroascorbate reductase (NADH), cucumber,
           PIR:JU0182
          Length = 435

 Score = 27.5 bits (58), Expect = 7.1
 Identities = 13/49 (26%), Positives = 21/49 (42%)
 Frame = +3

Query: 444 GSYWQSIRSILEAVLHGGLPSDHRDXTFMVRGGMRAAXFKVVETDPSPF 590
           GSYW   R ++ A L GG P ++     + R        +V+  +   F
Sbjct: 383 GSYWIKERKVVGAFLEGGSPEENNAIAKLARAQPSVESLEVLSKEGLSF 431


>At1g67390.1 68414.m07670 F-box family protein contains Pfam
           PF00646: F-box domain
          Length = 479

 Score = 27.5 bits (58), Expect = 7.1
 Identities = 17/51 (33%), Positives = 23/51 (45%)
 Frame = +1

Query: 379 APCPSVKYGKRVHILPIDDSVEGLTGNLFEVYLKPYFMEAYRPTIVTTPSW 531
           AP  S   GKR+ I PIDD +  L  ++  + L     E    T V +  W
Sbjct: 23  APRSSDARGKRILIDPIDDRISKLPDDVLVMILASLSTEDALKTSVLSTRW 73


>At1g49400.1 68414.m05537 ribosomal protein S17 family protein
           similar to 40S ribosomal protein S17 GI:1620985 from
           [Nicotiana plumbaginifolia]
          Length = 116

 Score = 27.5 bits (58), Expect = 7.1
 Identities = 18/44 (40%), Positives = 23/44 (52%)
 Frame = +3

Query: 57  SNNKF*IKWQIIKALMIYRPRSSVARTDPTVSLSKKQSAMTTQS 188
           S NK  I  +IIK   IY P+++ A    + S S   SA TT S
Sbjct: 64  SKNKHWIVAEIIKKARIYSPKAAAAAVSASASAS---SASTTDS 104


>At1g45231.2 68414.m05189 WW domain-containing protein Since this
           genomic sequence region is unfinished, the annotated
           gene may be missing a stop codon or start codon
          Length = 538

 Score = 27.1 bits (57), Expect = 9.4
 Identities = 17/45 (37%), Positives = 24/45 (53%)
 Frame = -1

Query: 256 CLEQDCVTTEELKLLHFGL*KCHD*VVIADCFFDNETVGSVLATE 122
           C E+DCV   E++  +      H+ VV+  CF  N    SVLA+E
Sbjct: 120 CFEEDCVQVIEVEEEN------HE-VVVGSCFLGNGDGDSVLASE 157


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,317,366
Number of Sequences: 28952
Number of extensions: 267926
Number of successful extensions: 705
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 688
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 704
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1180950720
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)