Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1406
         (673 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC17C9.03 |tif471||translation initiation factor eIF4G |Schizo...    29   0.81 
SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyce...    27   3.3  
SPAC1486.04c |alm1||medial ring protein Alm1|Schizosaccharomyces...    26   5.7  
SPAC664.14 |amt2||ammonium transporter Amt2|Schizosaccharomyces ...    25   9.9  

>SPAC17C9.03 |tif471||translation initiation factor eIF4G
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1403

 Score = 28.7 bits (61), Expect = 0.81
 Identities = 19/72 (26%), Positives = 33/72 (45%)
 Frame = +1

Query: 1   AEVALMVAAKSSSPKGTYVRALKELAVTVKEATEDLVGYTAAEEAKRLRAVNVKQEQEIL 180
           AE    + A+ ++ +    +A +E     K   E+     A E+AKR    N K+E E  
Sbjct: 549 AEEKARLEAEENAKREAEEQAKREAEEKAKREAEEKAKREAEEKAKREAEENAKREAEEK 608

Query: 181 QLRKELDEVRRE 216
             R+  ++ +RE
Sbjct: 609 AKREAEEKAKRE 620



 Score = 27.9 bits (59), Expect = 1.4
 Identities = 19/64 (29%), Positives = 28/64 (43%)
 Frame = +1

Query: 25  AKSSSPKGTYVRALKELAVTVKEATEDLVGYTAAEEAKRLRAVNVKQEQEILQLRKELDE 204
           A+  + +    +A +E     K   E+     A E AKR     VK+E E    RK  +E
Sbjct: 645 AEEKAKREAEEKAKREAEENAKREAEEKAKREAEENAKREAEEKVKRETEENAKRKAEEE 704

Query: 205 VRRE 216
            +RE
Sbjct: 705 GKRE 708



 Score = 26.6 bits (56), Expect = 3.3
 Identities = 17/64 (26%), Positives = 28/64 (43%)
 Frame = +1

Query: 25  AKSSSPKGTYVRALKELAVTVKEATEDLVGYTAAEEAKRLRAVNVKQEQEILQLRKELDE 204
           A+  + +    +A +E     K   E+     A E+AKR    N K+E E    R+  + 
Sbjct: 621 AEEKAKREAEEKAKREAEEKAKREAEEKAKREAEEKAKREAEENAKREAEEKAKREAEEN 680

Query: 205 VRRE 216
            +RE
Sbjct: 681 AKRE 684



 Score = 25.4 bits (53), Expect = 7.5
 Identities = 17/64 (26%), Positives = 28/64 (43%)
 Frame = +1

Query: 25  AKSSSPKGTYVRALKELAVTVKEATEDLVGYTAAEEAKRLRAVNVKQEQEILQLRKELDE 204
           A+  + +    +A +E     K   E+     A E AKR      K+E E    R+  ++
Sbjct: 629 AEEKAKREAEEKAKREAEEKAKREAEEKAKREAEENAKREAEEKAKREAEENAKREAEEK 688

Query: 205 VRRE 216
           V+RE
Sbjct: 689 VKRE 692



 Score = 25.0 bits (52), Expect = 9.9
 Identities = 16/64 (25%), Positives = 28/64 (43%)
 Frame = +1

Query: 25  AKSSSPKGTYVRALKELAVTVKEATEDLVGYTAAEEAKRLRAVNVKQEQEILQLRKELDE 204
           A+  + +    +A +E     K   E+     A E+AKR      K+E E    R+  ++
Sbjct: 581 AEEKAKREAEEKAKREAEENAKREAEEKAKREAEEKAKREAEEKAKREAEEKAKREAEEK 640

Query: 205 VRRE 216
            +RE
Sbjct: 641 AKRE 644



 Score = 25.0 bits (52), Expect = 9.9
 Identities = 16/64 (25%), Positives = 29/64 (45%)
 Frame = +1

Query: 25  AKSSSPKGTYVRALKELAVTVKEATEDLVGYTAAEEAKRLRAVNVKQEQEILQLRKELDE 204
           A+ ++ +    +A +E     K   E+     A E+AKR      K+E E    R+  ++
Sbjct: 597 AEENAKREAEEKAKREAEEKAKREAEEKAKREAEEKAKREAEEKAKREAEEKAKREAEEK 656

Query: 205 VRRE 216
            +RE
Sbjct: 657 AKRE 660


>SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1957

 Score = 26.6 bits (56), Expect = 3.3
 Identities = 15/71 (21%), Positives = 35/71 (49%), Gaps = 2/71 (2%)
 Frame = +1

Query: 34   SSPKGTYVRALKELAVTVKEATEDL--VGYTAAEEAKRLRAVNVKQEQEILQLRKELDEV 207
            ++ K  Y   L +    +++ +E++  +    AEE   ++ ++ ++E EILQ    L ++
Sbjct: 1526 TASKNNYEGKLNDKDSIIRDLSENIEQLNNLLAEEKSAVKRLSTEKESEILQFNSRLADL 1585

Query: 208  RRELARVSQVL 240
                ++V   L
Sbjct: 1586 EYHKSQVESEL 1596


>SPAC1486.04c |alm1||medial ring protein Alm1|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1727

 Score = 25.8 bits (54), Expect = 5.7
 Identities = 13/43 (30%), Positives = 23/43 (53%), Gaps = 1/43 (2%)
 Frame = +1

Query: 94   ATEDLVGYTAAEEAKRLRAVNVKQEQEILQL-RKELDEVRREL 219
            +T D   +   E  KR   +    E+++ Q  +K+LD +R+EL
Sbjct: 1592 STADFTTFVQKEWEKRREILQKDVEEQVAQSHQKQLDNIRKEL 1634


>SPAC664.14 |amt2||ammonium transporter Amt2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 512

 Score = 25.0 bits (52), Expect = 9.9
 Identities = 8/13 (61%), Positives = 9/13 (69%)
 Frame = -1

Query: 49  CPSGCWIWRRPSG 11
           CP  CWIW  P+G
Sbjct: 181 CPIACWIW-NPNG 192


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,451,401
Number of Sequences: 5004
Number of extensions: 43401
Number of successful extensions: 174
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 154
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 172
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 307866294
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)