Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--1406
(673 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_03_0084 - 16386962-16387033,16387124-16387175,16387252-163873... 33 0.21
03_02_0674 - 10329933-10331537 33 0.27
04_04_0999 - 30002433-30003279,30003384-30003513,30003620-30003758 31 0.84
09_06_0310 - 22212348-22212695,22213561-22213766,22213796-222139... 31 1.1
09_03_0179 - 13131404-13131514,13131834-13131920,13132316-131324... 31 1.1
08_02_1196 - 25190040-25190065,25190224-25190302,25190554-251906... 30 1.9
01_07_0313 + 42681902-42681950,42682800-42682935,42683399-426835... 30 1.9
08_01_0264 - 2142856-2143152,2143667-2143829,2143915-2143992,214... 29 3.4
05_03_0125 + 8738770-8739237,8739266-8739742 29 3.4
03_02_0775 - 11096620-11097240 29 4.5
01_06_1215 - 35473524-35473988,35474571-35475386 28 5.9
05_07_0329 - 29308867-29308932,29309040-29309159,29309245-293093... 28 7.8
>06_03_0084 -
16386962-16387033,16387124-16387175,16387252-16387313,
16387509-16387543,16387637-16387679,16388610-16388692,
16388829-16388917,16390415-16390681,16391370-16391446,
16391546-16391677,16391802-16391870,16392464-16392529,
16392603-16392773,16392848-16392916,16393005-16393086,
16393175-16393219,16393535-16393659,16394271-16394525,
16396561-16396722
Length = 651
Score = 33.1 bits (72), Expect = 0.21
Identities = 22/65 (33%), Positives = 34/65 (52%)
Frame = +1
Query: 31 SSSPKGTYVRALKELAVTVKEATEDLVGYTAAEEAKRLRAVNVKQEQEILQLRKELDEVR 210
SS P G + R KEL + + + AEE +RL+ N + E++I L K+ + +R
Sbjct: 588 SSQPSGVHFRE-KELQSYIANLQQSVT--ELAEEVQRLKLKNTQLEEQINALPKKDERLR 644
Query: 211 RELAR 225
RE R
Sbjct: 645 REDTR 649
>03_02_0674 - 10329933-10331537
Length = 534
Score = 32.7 bits (71), Expect = 0.27
Identities = 23/74 (31%), Positives = 37/74 (50%), Gaps = 1/74 (1%)
Frame = +1
Query: 19 VAAKSSSPKGTYVRALKELAVTVKEATEDLVGYTAAEEAKRLRAVNVKQEQEIL-QLRKE 195
V A + +G +R E K + GY AEEAK+ R ++V ++ EIL Q +K+
Sbjct: 447 VVASAGRREGIELRNEDEKIAAAKRKLRE--GYQEAEEAKKRRKIHVIEDPEILKQRQKK 504
Query: 196 LDEVRRELARVSQV 237
+ + +R S V
Sbjct: 505 MHPILSLRSRASHV 518
>04_04_0999 - 30002433-30003279,30003384-30003513,30003620-30003758
Length = 371
Score = 31.1 bits (67), Expect = 0.84
Identities = 11/20 (55%), Positives = 14/20 (70%)
Frame = +2
Query: 251 HHCDPGPEHQGGRGGVAPTA 310
+HC PGP+ Q GR G P+A
Sbjct: 314 YHCHPGPQGQPGRAGPPPSA 333
>09_06_0310 -
22212348-22212695,22213561-22213766,22213796-22213905,
22214351-22214427,22214466-22214486,22214518-22215651
Length = 631
Score = 30.7 bits (66), Expect = 1.1
Identities = 19/75 (25%), Positives = 38/75 (50%), Gaps = 2/75 (2%)
Frame = +1
Query: 22 AAKSSSPKGTYVRALKELAVTVKEATEDLVGY--TAAEEAKRLRAVNVKQEQEILQLRKE 195
A ++ + Y ++ L + V A E++ + A EEA+ +A+ + E ++ L KE
Sbjct: 464 ACMPTTKRVMYTLKVEGLMMDVTAAEEEIKRWKMAAEEEAEAGKAIEQEFETQLSSLNKE 523
Query: 196 LDEVRRELARVSQVL 240
LDE ++ + + L
Sbjct: 524 LDEAKQAMLELENKL 538
>09_03_0179 -
13131404-13131514,13131834-13131920,13132316-13132448,
13133079-13133319,13133423-13133540,13133546-13133731,
13133864-13134049,13134443-13134652,13135171-13135347,
13135823-13135964,13136385-13136927,13137565-13138022
Length = 863
Score = 30.7 bits (66), Expect = 1.1
Identities = 20/40 (50%), Positives = 25/40 (62%)
Frame = +1
Query: 121 AAEEAKRLRAVNVKQEQEILQLRKELDEVRRELARVSQVL 240
AAEEA+RLR V +Q +E LR + EV RE A +VL
Sbjct: 110 AAEEAERLRGVVRRQRKE---LRARIAEVAREEAERKRVL 146
>08_02_1196 -
25190040-25190065,25190224-25190302,25190554-25190646,
25190761-25190892,25191578-25191721,25192941-25193150,
25194915-25195406
Length = 391
Score = 29.9 bits (64), Expect = 1.9
Identities = 13/21 (61%), Positives = 13/21 (61%)
Frame = -2
Query: 81 DCQLLQCTHVRALRAAGFGGD 19
D L C HV ALR AG GGD
Sbjct: 75 DAYALACLHVAALRVAGGGGD 95
>01_07_0313 +
42681902-42681950,42682800-42682935,42683399-42683501,
42683514-42683621,42684274-42684513,42684819-42684951,
42685038-42685219,42685506-42685618,42687450-42687555
Length = 389
Score = 29.9 bits (64), Expect = 1.9
Identities = 10/28 (35%), Positives = 15/28 (53%)
Frame = -2
Query: 600 DQWKLEPGGRCAFRMKAACAVTLLLGPR 517
D W L+PGGR F +C + +G +
Sbjct: 35 DDWDLQPGGRYFFTRNMSCLIAFAVGEK 62
>08_01_0264 -
2142856-2143152,2143667-2143829,2143915-2143992,
2144097-2144162,2144941-2145098
Length = 253
Score = 29.1 bits (62), Expect = 3.4
Identities = 17/47 (36%), Positives = 27/47 (57%)
Frame = +1
Query: 76 AVTVKEATEDLVGYTAAEEAKRLRAVNVKQEQEILQLRKELDEVRRE 216
A + +AT ++ A EAK+L+ N E +I +L+ E DE+R E
Sbjct: 120 AAILSDATRMVIQLRA--EAKQLKDTNESLEDKIKELKAEKDELRDE 164
>05_03_0125 + 8738770-8739237,8739266-8739742
Length = 314
Score = 29.1 bits (62), Expect = 3.4
Identities = 12/33 (36%), Positives = 24/33 (72%)
Frame = +1
Query: 112 GYTAAEEAKRLRAVNVKQEQEILQLRKELDEVR 210
GY AEEAK+ R ++V ++ ++L+ ++E ++R
Sbjct: 281 GYQDAEEAKKRRKIHVIEDPKMLKHKQEKMDIR 313
>03_02_0775 - 11096620-11097240
Length = 206
Score = 28.7 bits (61), Expect = 4.5
Identities = 20/52 (38%), Positives = 24/52 (46%)
Frame = +2
Query: 212 GSWRGFRRC*RCPHHCDPGPEHQGGRGGVAPTAHYASCRHYARRSL*RAGGT 367
G+WR RR P C G H G GGVA + R R +L R GG+
Sbjct: 138 GAWRRGRRG---PWRC--GRRHGGQFGGVAEAGVWCCDRRRLREALCRRGGS 184
>01_06_1215 - 35473524-35473988,35474571-35475386
Length = 426
Score = 28.3 bits (60), Expect = 5.9
Identities = 15/45 (33%), Positives = 24/45 (53%), Gaps = 1/45 (2%)
Frame = -2
Query: 588 LEPGGRCAFRMKAACAVTLLLGP-RILFSPMSSVALKTVPHPVQH 457
L P AF+++ + + L+ P R P+SS +L+ V P QH
Sbjct: 62 LHPSLPVAFKVQTSSPLKFLVSPPRGAVQPLSSASLRVVLRPQQH 106
>05_07_0329 -
29308867-29308932,29309040-29309159,29309245-29309364,
29309566-29310123,29310199-29310258,29310839-29310904,
29310993-29311103,29311167-29311257,29311349-29311449,
29311534-29311641,29311737-29314205
Length = 1289
Score = 27.9 bits (59), Expect = 7.8
Identities = 20/63 (31%), Positives = 33/63 (52%)
Frame = +1
Query: 37 SPKGTYVRALKELAVTVKEATEDLVGYTAAEEAKRLRAVNVKQEQEILQLRKELDEVRRE 216
+PKG +K+L V+E E L AEE K+ +++E +L+KE +E + E
Sbjct: 411 APKGKV--DMKKLPKHVREMQEALARRQEAEERKKREEEERLRKEEEERLKKEEEERKAE 468
Query: 217 LAR 225
A+
Sbjct: 469 EAK 471
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,448,759
Number of Sequences: 37544
Number of extensions: 439693
Number of successful extensions: 1780
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1688
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1776
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1703141568
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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