Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--1406
(673 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_904| Best HMM Match : zf-C3HC4 (HMM E-Value=7.4e-08) 31 1.1
SB_38450| Best HMM Match : zf-CCHC (HMM E-Value=0.00018) 30 1.5
SB_56523| Best HMM Match : Pox_A_type_inc (HMM E-Value=0) 30 2.0
SB_7995| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.6
SB_46755| Best HMM Match : zf-C2H2 (HMM E-Value=1.09301e-43) 29 3.4
SB_43856| Best HMM Match : Laminin_I (HMM E-Value=0.057) 29 3.4
SB_3733| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.4
SB_2495| Best HMM Match : Pox_A_type_inc (HMM E-Value=8.2e-11) 29 3.4
SB_57289| Best HMM Match : Pox_A_type_inc (HMM E-Value=0.037) 29 4.5
SB_23188| Best HMM Match : UVR (HMM E-Value=4.2) 29 4.5
SB_4105| Best HMM Match : WAP (HMM E-Value=0.0002) 29 4.5
SB_29515| Best HMM Match : TolA (HMM E-Value=0.031) 29 4.5
SB_42549| Best HMM Match : Peptidase_A17 (HMM E-Value=1e-35) 28 6.0
SB_9721| Best HMM Match : Filament (HMM E-Value=0.2) 28 6.0
SB_1208| Best HMM Match : GRAM (HMM E-Value=0.0034) 28 6.0
>SB_904| Best HMM Match : zf-C3HC4 (HMM E-Value=7.4e-08)
Length = 510
Score = 30.7 bits (66), Expect = 1.1
Identities = 14/40 (35%), Positives = 25/40 (62%)
Frame = +1
Query: 115 YTAAEEAKRLRAVNVKQEQEILQLRKELDEVRRELARVSQ 234
Y A +EAKR + + ++++E+ L ++ + RREL R Q
Sbjct: 297 YEAEQEAKRQKLAHAERQRELYLLYQKQQQRRRELEREEQ 336
>SB_38450| Best HMM Match : zf-CCHC (HMM E-Value=0.00018)
Length = 1066
Score = 30.3 bits (65), Expect = 1.5
Identities = 24/78 (30%), Positives = 43/78 (55%), Gaps = 1/78 (1%)
Frame = +1
Query: 4 EVALMVAAKSSSPKGTYVRALKELAVTVKEATEDLVGYTAAEEAK-RLRAVNVKQEQEIL 180
E A +++ KS SP +++K + +V+ ++ A E AK + + +++ QEI
Sbjct: 122 ERAELLSNKSRSPFKQATKSVKSDS-SVRTSSTTPSKRAAIEAAKLEQKMIALQRRQEID 180
Query: 181 QLRKELDEVRRELARVSQ 234
+ R EL+ RREL R S+
Sbjct: 181 RRRDELERERRELERSSE 198
>SB_56523| Best HMM Match : Pox_A_type_inc (HMM E-Value=0)
Length = 2858
Score = 29.9 bits (64), Expect = 2.0
Identities = 12/35 (34%), Positives = 23/35 (65%)
Frame = +1
Query: 127 EEAKRLRAVNVKQEQEILQLRKELDEVRRELARVS 231
+E + L+ + +++QEIL L ++E+ LAR+S
Sbjct: 1373 DENENLKESDARRQQEILDLENRINELENMLARIS 1407
>SB_7995| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 509
Score = 29.5 bits (63), Expect = 2.6
Identities = 19/51 (37%), Positives = 26/51 (50%)
Frame = +1
Query: 64 LKELAVTVKEATEDLVGYTAAEEAKRLRAVNVKQEQEILQLRKELDEVRRE 216
+KE+ +EA E LV E +R + K EQE+ Q+R D RRE
Sbjct: 73 IKEVCKKAREAVEVLVDAKRREMMAVVRELQRKHEQELRQVR---DRTRRE 120
>SB_46755| Best HMM Match : zf-C2H2 (HMM E-Value=1.09301e-43)
Length = 1806
Score = 29.1 bits (62), Expect = 3.4
Identities = 17/65 (26%), Positives = 30/65 (46%)
Frame = +1
Query: 1 AEVALMVAAKSSSPKGTYVRALKELAVTVKEATEDLVGYTAAEEAKRLRAVNVKQEQEIL 180
A V L ++ SSP+ ++ E+ +KEA++ ++ T + A EQ +L
Sbjct: 492 ALVTLAASSTDSSPERVLLQLTPEVVSKLKEASDIVLSQTKEKSAATTSQTKTLNEQHVL 551
Query: 181 QLRKE 195
KE
Sbjct: 552 LAIKE 556
>SB_43856| Best HMM Match : Laminin_I (HMM E-Value=0.057)
Length = 976
Score = 29.1 bits (62), Expect = 3.4
Identities = 18/55 (32%), Positives = 29/55 (52%)
Frame = +1
Query: 61 ALKELAVTVKEATEDLVGYTAAEEAKRLRAVNVKQEQEILQLRKELDEVRRELAR 225
++KEL+ T+++ GY AEE RL + + LRK L+ + R L+R
Sbjct: 103 SIKELSHDTVRLTDEIRGYADAEE--RLHNEKNDLKDAVGVLRKTLEGIERRLSR 155
>SB_3733| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1755
Score = 29.1 bits (62), Expect = 3.4
Identities = 13/26 (50%), Positives = 19/26 (73%)
Frame = +1
Query: 142 LRAVNVKQEQEILQLRKELDEVRREL 219
L A +QE+EIL+L+++LDE R L
Sbjct: 1046 LNAARKRQEEEILRLKQKLDESRLSL 1071
>SB_2495| Best HMM Match : Pox_A_type_inc (HMM E-Value=8.2e-11)
Length = 2024
Score = 29.1 bits (62), Expect = 3.4
Identities = 21/65 (32%), Positives = 32/65 (49%)
Frame = +1
Query: 16 MVAAKSSSPKGTYVRALKELAVTVKEATEDLVGYTAAEEAKRLRAVNVKQEQEILQLRKE 195
M +K S Y + + L V+ T GYT+ E +RLR+ VK E E+ L+KE
Sbjct: 978 MEISKLKSETTGYQQKIAALEREVEYKTSITQGYTS--EIERLRSDRVKLESEMGTLKKE 1035
Query: 196 LDEVR 210
++
Sbjct: 1036 YTNLK 1040
>SB_57289| Best HMM Match : Pox_A_type_inc (HMM E-Value=0.037)
Length = 396
Score = 28.7 bits (61), Expect = 4.5
Identities = 17/65 (26%), Positives = 33/65 (50%)
Frame = +1
Query: 25 AKSSSPKGTYVRALKELAVTVKEATEDLVGYTAAEEAKRLRAVNVKQEQEILQLRKELDE 204
AKS + Y R L E+ ++ E+L Y + ++ ++ QE+ QLR E +E
Sbjct: 31 AKSQKMQEDYERQLTEMEEAREQVLEELTEYYENKLQEKTAQLDQSQEESRQQLR-EYEE 89
Query: 205 VRREL 219
++++
Sbjct: 90 TKKQI 94
>SB_23188| Best HMM Match : UVR (HMM E-Value=4.2)
Length = 168
Score = 28.7 bits (61), Expect = 4.5
Identities = 18/56 (32%), Positives = 30/56 (53%), Gaps = 3/56 (5%)
Frame = +1
Query: 58 RALKELAVTVKEATEDLVGYTAAEEAKRL---RAVNVKQEQEILQLRKELDEVRRE 216
+ +EL+ A + L+ T E K L + + +++ EIL LR EL+E R+E
Sbjct: 30 KTCEELSTLENTAVDSLLRDTITELQKALYESKRLLAERDTEILTLRNELEESRKE 85
>SB_4105| Best HMM Match : WAP (HMM E-Value=0.0002)
Length = 428
Score = 28.7 bits (61), Expect = 4.5
Identities = 17/61 (27%), Positives = 30/61 (49%), Gaps = 1/61 (1%)
Frame = -2
Query: 549 ACAVTLLLGPRILFSPMSSVALKTVPHPVQHQRRQGD*TILPGSSACPPLAVVAF-GAPV 373
AC + L+ +L S +S + K++ V H R++ ++ CPP A + F G P
Sbjct: 2 ACRMYRLVLVLMLLSVLSCASAKSIKKKVHHLRKRSI-SLFAMKDTCPPRAFIPFPGEPC 60
Query: 372 E 370
+
Sbjct: 61 Q 61
>SB_29515| Best HMM Match : TolA (HMM E-Value=0.031)
Length = 592
Score = 28.7 bits (61), Expect = 4.5
Identities = 13/38 (34%), Positives = 24/38 (63%)
Frame = +1
Query: 127 EEAKRLRAVNVKQEQEILQLRKELDEVRRELARVSQVL 240
E KR+R +++QE++ RK +E+RRE ++ + L
Sbjct: 413 EREKRMREDFERKKQELIAQRKLEEEIRREQEKIDREL 450
>SB_42549| Best HMM Match : Peptidase_A17 (HMM E-Value=1e-35)
Length = 1595
Score = 28.3 bits (60), Expect = 6.0
Identities = 22/78 (28%), Positives = 43/78 (55%), Gaps = 1/78 (1%)
Frame = +1
Query: 4 EVALMVAAKSSSPKGTYVRALKELAVTVKEATEDLVGYTAAEEAK-RLRAVNVKQEQEIL 180
E A +++ KS SP +++K + +V+ ++ A E AK + + +++ QEI
Sbjct: 115 ERAELLSNKSRSPFKQATKSVKSDS-SVRTSSTTPSKRAAIEAAKLEQKMIALQRRQEID 173
Query: 181 QLRKELDEVRRELARVSQ 234
+ R E++ R+EL R S+
Sbjct: 174 RRRDEIERERKELERSSE 191
>SB_9721| Best HMM Match : Filament (HMM E-Value=0.2)
Length = 216
Score = 28.3 bits (60), Expect = 6.0
Identities = 16/42 (38%), Positives = 26/42 (61%), Gaps = 1/42 (2%)
Frame = +1
Query: 121 AAEEAKRLRAVNVKQEQEILQLRKELDEVRRELA-RVSQVLA 243
A E A R + +E +LRK+LD+ +RELA +++Q+ A
Sbjct: 10 ADEVASRATLMVTMLSEENAKLRKQLDDTKRELAQQLNQIQA 51
>SB_1208| Best HMM Match : GRAM (HMM E-Value=0.0034)
Length = 1021
Score = 28.3 bits (60), Expect = 6.0
Identities = 16/43 (37%), Positives = 31/43 (72%), Gaps = 1/43 (2%)
Frame = +1
Query: 112 GYTAAEEAKRLRAVNVKQEQEILQLRKELDEV-RRELARVSQV 237
G ++E+++++ + N K+E +QLRKELD + ++E RVS++
Sbjct: 376 GTGSSEKSQKVHSANWKEE---IQLRKELDCLNKQEQQRVSRI 415
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,337,693
Number of Sequences: 59808
Number of extensions: 400892
Number of successful extensions: 1372
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 1238
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1364
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1721264831
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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