Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1406
         (673 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ535203-1|CAD59403.1| 1229|Anopheles gambiae SMC1 protein protein.    27   0.71 
AJ535208-1|CAD59408.1| 1133|Anopheles gambiae SMC6 protein protein.    26   1.2  
EF382662-1|ABN54495.1|  178|Anopheles gambiae CPF family cuticle...    25   2.2  
DQ219483-1|ABB29887.1|  961|Anopheles gambiae cryptochrome 2 pro...    24   5.0  
AY263176-1|AAP78791.1|  705|Anopheles gambiae TmcB-like protein ...    23   6.6  
AY825574-1|AAV70185.1|  172|Anopheles gambiae cytochrome P450 pr...    23   8.8  
AY825573-1|AAV70184.1|  172|Anopheles gambiae cytochrome P450 pr...    23   8.8  

>AJ535203-1|CAD59403.1| 1229|Anopheles gambiae SMC1 protein protein.
          Length = 1229

 Score = 26.6 bits (56), Expect = 0.71
 Identities = 16/37 (43%), Positives = 24/37 (64%), Gaps = 3/37 (8%)
 Frame = +1

Query: 115 YTAAEEAKRLRAVNVKQEQE--ILQLRK-ELDEVRRE 216
           Y   +EAKRL+   + ++QE  I++ RK E DEV +E
Sbjct: 239 YHNEKEAKRLKEDQISKQQELNIIEKRKEEADEVLKE 275



 Score = 24.2 bits (50), Expect = 3.8
 Identities = 9/28 (32%), Positives = 19/28 (67%)
 Frame = +1

Query: 160 KQEQEILQLRKELDEVRRELARVSQVLA 243
           + E+E+ + R+E+  + +ELA + Q +A
Sbjct: 896 QMEEEMAKARREVQALAKELAAIHQSIA 923


>AJ535208-1|CAD59408.1| 1133|Anopheles gambiae SMC6 protein protein.
          Length = 1133

 Score = 25.8 bits (54), Expect = 1.2
 Identities = 20/63 (31%), Positives = 34/63 (53%), Gaps = 1/63 (1%)
 Frame = +1

Query: 49  TYVRALKELAVTVKEA-TEDLVGYTAAEEAKRLRAVNVKQEQEILQLRKELDEVRRELAR 225
           T  + L++LA  V E  TE+    T  EE +  R +  K ++ I + + +LD+VRR + +
Sbjct: 762 TNEQQLQQLAGVVFEGETEET---TLREELEHSRTILAKLQKGIEEEQAKLDQVRRTVQQ 818

Query: 226 VSQ 234
             Q
Sbjct: 819 EEQ 821


>EF382662-1|ABN54495.1|  178|Anopheles gambiae CPF family cuticle
           protein protein.
          Length = 178

 Score = 25.0 bits (52), Expect = 2.2
 Identities = 9/29 (31%), Positives = 12/29 (41%)
 Frame = +2

Query: 251 HHCDPGPEHQGGRGGVAPTAHYASCRHYA 337
           H+  P   +       AP  HY +  HYA
Sbjct: 95  HYAAPAVHYPAAAHYAAPAVHYPAAAHYA 123


>DQ219483-1|ABB29887.1|  961|Anopheles gambiae cryptochrome 2
           protein.
          Length = 961

 Score = 23.8 bits (49), Expect = 5.0
 Identities = 12/31 (38%), Positives = 16/31 (51%)
 Frame = +2

Query: 287 RGGVAPTAHYASCRHYARRSL*RAGGTASTG 379
           R G  P A YA+ +  +  +L RAG   S G
Sbjct: 653 RYGTLPVAEYAAIKPDSLSTLIRAGNLTSAG 683


>AY263176-1|AAP78791.1|  705|Anopheles gambiae TmcB-like protein
           protein.
          Length = 705

 Score = 23.4 bits (48), Expect = 6.6
 Identities = 9/16 (56%), Positives = 12/16 (75%)
 Frame = +2

Query: 362 GTASTGAPNATTASGG 409
           GTAS G  N+T++S G
Sbjct: 688 GTASAGTTNSTSSSSG 703


>AY825574-1|AAV70185.1|  172|Anopheles gambiae cytochrome P450
           protein.
          Length = 172

 Score = 23.0 bits (47), Expect = 8.8
 Identities = 9/27 (33%), Positives = 15/27 (55%)
 Frame = +1

Query: 505 RKEDAWPQEKCHRASGFHPKRTPSSRL 585
           R+ED +P  +      F P+RT ++ L
Sbjct: 145 RREDLYPHPETFNPDNFLPERTQNAPL 171


>AY825573-1|AAV70184.1|  172|Anopheles gambiae cytochrome P450
           protein.
          Length = 172

 Score = 23.0 bits (47), Expect = 8.8
 Identities = 9/27 (33%), Positives = 15/27 (55%)
 Frame = +1

Query: 505 RKEDAWPQEKCHRASGFHPKRTPSSRL 585
           R+ED +P  +      F P+RT ++ L
Sbjct: 145 RREDLYPHPETFNPDNFLPERTQNAPL 171


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 654,874
Number of Sequences: 2352
Number of extensions: 12344
Number of successful extensions: 83
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 77
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 82
length of database: 563,979
effective HSP length: 62
effective length of database: 418,155
effective search space used: 67322955
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)