Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1406
         (673 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              26   0.28 
X52884-1|CAA37066.1|  461|Apis mellifera elongation factor 1 alp...    24   1.5  
EF013227-1|ABK54581.1|  119|Apis mellifera elongation factor 1-a...    24   1.5  
AF015267-1|AAC38959.1|  461|Apis mellifera elongation factor-1al...    23   2.0  
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    23   2.6  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    23   2.6  
DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chlor...    22   6.1  

>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 26.2 bits (55), Expect = 0.28
 Identities = 16/48 (33%), Positives = 22/48 (45%), Gaps = 2/48 (4%)
 Frame = +2

Query: 248  PHHCDPGPEHQGGRGGV--APTAHYASCRHYARRSL*RAGGTASTGAP 385
            P +C P  +  G + G   AP  HY S     RRS+  A     +G+P
Sbjct: 1810 PANCAPEEDQYGSQYGQYGAPYDHYGSRGSVGRRSVGSARNIPVSGSP 1857



 Score = 21.4 bits (43), Expect = 8.1
 Identities = 9/22 (40%), Positives = 12/22 (54%)
 Frame = -2

Query: 531  LLGPRILFSPMSSVALKTVPHP 466
            LLG R    P  ++  +T PHP
Sbjct: 1730 LLGFREEMDPSKAMQFQTFPHP 1751


>X52884-1|CAA37066.1|  461|Apis mellifera elongation factor 1 alpha
           protein.
          Length = 461

 Score = 23.8 bits (49), Expect = 1.5
 Identities = 12/33 (36%), Positives = 16/33 (48%)
 Frame = +1

Query: 481 LQCHR*HWRKEDAWPQEKCHRASGFHPKRTPSS 579
           L CH  H   + A  +EKC R +G   +  P S
Sbjct: 361 LDCHTAHIACKFAEIKEKCDRRTGKTTEENPKS 393


>EF013227-1|ABK54581.1|  119|Apis mellifera elongation factor
           1-alpha protein.
          Length = 119

 Score = 23.8 bits (49), Expect = 1.5
 Identities = 12/33 (36%), Positives = 16/33 (48%)
 Frame = +1

Query: 481 LQCHR*HWRKEDAWPQEKCHRASGFHPKRTPSS 579
           L CH  H   + A  +EKC R +G   +  P S
Sbjct: 72  LDCHTAHIACKFAEIKEKCDRRTGKTTEENPKS 104


>AF015267-1|AAC38959.1|  461|Apis mellifera elongation factor-1alpha
           F2 protein.
          Length = 461

 Score = 23.4 bits (48), Expect = 2.0
 Identities = 12/33 (36%), Positives = 16/33 (48%)
 Frame = +1

Query: 481 LQCHR*HWRKEDAWPQEKCHRASGFHPKRTPSS 579
           L CH  H   + A  +EKC R +G   +  P S
Sbjct: 361 LDCHTAHIACKFADIKEKCDRRNGKTTEENPKS 393


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
           AbsCAM-Ig7B protein.
          Length = 1923

 Score = 23.0 bits (47), Expect = 2.6
 Identities = 9/26 (34%), Positives = 14/26 (53%)
 Frame = +1

Query: 415 RGAGKNRLIPLSSLMLHRMRHRLQCH 492
           +G GK  L+P   L++H +    Q H
Sbjct: 180 QGDGKFHLLPTGELLVHSLEFSDQIH 205


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
           AbsCAM-Ig7A protein.
          Length = 1919

 Score = 23.0 bits (47), Expect = 2.6
 Identities = 9/26 (34%), Positives = 14/26 (53%)
 Frame = +1

Query: 415 RGAGKNRLIPLSSLMLHRMRHRLQCH 492
           +G GK  L+P   L++H +    Q H
Sbjct: 180 QGDGKFHLLPTGELLVHSLEFSDQIH 205


>DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 428

 Score = 21.8 bits (44), Expect = 6.1
 Identities = 9/14 (64%), Positives = 9/14 (64%)
 Frame = -2

Query: 300 ATPPLPPWCSGPGS 259
           A PP PP  SGP S
Sbjct: 342 APPPPPPSSSGPDS 355


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 172,320
Number of Sequences: 438
Number of extensions: 3448
Number of successful extensions: 10
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20343105
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)