Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1406
         (673 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g45249.2 68414.m05192 ABA-responsive element-binding protein ...    32   0.40 
At3g49900.1 68416.m05455 BTB/POZ domain-containing protein conta...    31   0.53 
At1g20970.1 68414.m02625 adhesin-related contains TIGRFAM TIGR01...    31   0.92 
At1g04790.1 68414.m00475 zinc finger (C3HC4-type RING finger) fa...    31   0.92 
At3g05130.1 68416.m00557 expressed protein ; expression supporte...    30   1.6  
At3g28780.1 68416.m03592 glycine-rich protein similar to H41 gen...    29   2.8  
At5g04710.1 68418.m00480 aspartyl aminopeptidase, putative simil...    29   3.7  
At2g45460.1 68415.m05654 forkhead-associated domain-containing p...    29   3.7  
At2g46180.1 68415.m05742 intracellular protein transport protein...    28   6.5  
At5g19960.1 68418.m02376 RNA recognition motif (RRM)-containing ...    27   8.6  

>At1g45249.2 68414.m05192 ABA-responsive element-binding protein 1
           (AREB1) identical to ABA-responsive element binding
           protein 1 (AREB1) [Arabidopsis thaliana] GI:9967417
          Length = 416

 Score = 31.9 bits (69), Expect = 0.40
 Identities = 14/40 (35%), Positives = 27/40 (67%)
 Frame = +1

Query: 118 TAAEEAKRLRAVNVKQEQEILQLRKELDEVRRELARVSQV 237
           +AA    R +A  V+ E E+ +L++E DE++R+ AR+ ++
Sbjct: 349 SAARSRARKQAYTVELEAEVAKLKEENDELQRKQARIMEM 388


>At3g49900.1 68416.m05455 BTB/POZ domain-containing protein contains
           BTB/POZ domain, INTERPRO:IPR000210
          Length = 517

 Score = 31.5 bits (68), Expect = 0.53
 Identities = 25/76 (32%), Positives = 38/76 (50%), Gaps = 4/76 (5%)
 Frame = +1

Query: 19  VAAKSSSPKGTYVRALKELAVTVKEATEDLVGY----TAAEEAKRLRAVNVKQEQEILQL 186
           VAA  ++P G   R   E+A   ++++  L       TAA +  RLRA        I  L
Sbjct: 317 VAASCAAPTGVRHR---EIATEARDSSVTLGSLLQRDTAARQNCRLRAAMNSTSSRIESL 373

Query: 187 RKELDEVRRELARVSQ 234
            KELD ++R L++ S+
Sbjct: 374 EKELDTMKRFLSKESE 389


>At1g20970.1 68414.m02625 adhesin-related contains TIGRFAM TIGR01612:
            reticulocyte binding protein; contains TIGRFAM TIGR00864:
            polycystin cation channel protein; similar to
            fimbriae-associated protein Fap1 [Streptococcus
            parasanguinis] (GI:3929312)
          Length = 1498

 Score = 30.7 bits (66), Expect = 0.92
 Identities = 17/62 (27%), Positives = 34/62 (54%)
 Frame = +1

Query: 52   YVRALKELAVTVKEATEDLVGYTAAEEAKRLRAVNVKQEQEILQLRKELDEVRRELARVS 231
            ++R +K+L   ++E     +G    +E K+      K E+ +  LRKELD +R +L++  
Sbjct: 933  FMREIKQLK-QLREQISSSMG--TKDEVKQALDEKEKTEERLKVLRKELDALRNDLSKAE 989

Query: 232  QV 237
            ++
Sbjct: 990  EI 991


>At1g04790.1 68414.m00475 zinc finger (C3HC4-type RING finger)
           family protein contains Pfam profile: PF00097 zinc
           finger, C3HC4 type (RING finger)
          Length = 634

 Score = 30.7 bits (66), Expect = 0.92
 Identities = 11/39 (28%), Positives = 27/39 (69%)
 Frame = +3

Query: 501 LAKRGCVAPREVSPRKRLSSETHTFLPAPASIDRELVND 617
           L + GC++P E++ R R +++T+++     S+++EL ++
Sbjct: 191 LVRHGCISPHEIAARARQAADTNSY--DTLSVEQELASE 227


>At3g05130.1 68416.m00557 expressed protein ; expression supported
           by MPSS
          Length = 634

 Score = 29.9 bits (64), Expect = 1.6
 Identities = 11/30 (36%), Positives = 24/30 (80%)
 Frame = +1

Query: 130 EAKRLRAVNVKQEQEILQLRKELDEVRREL 219
           +++ L++ NVK E+E+++LRK ++ ++ EL
Sbjct: 496 QSESLKSENVKLEKELVELRKAMEALKTEL 525


>At3g28780.1 68416.m03592 glycine-rich protein similar to H41 gene
           for histone protein GB:X15142 GI:3204 [Physarum
           polycephalum]
          Length = 614

 Score = 29.1 bits (62), Expect = 2.8
 Identities = 20/56 (35%), Positives = 25/56 (44%), Gaps = 2/56 (3%)
 Frame = +2

Query: 266 GPEHQGGRGGVAPTAHYASCRHYARRSL*RAGGTASTGAPNAT--TASGGQAEEPG 427
           G    GG    A  A  AS +         +GG+A TG  +A+   ASGG AE  G
Sbjct: 279 GESASGGAASGAGAASGASAKTGGESGEAASGGSAETGGESASAGAASGGSAETGG 334


>At5g04710.1 68418.m00480 aspartyl aminopeptidase, putative similar
           to SP|Q9ULA0 Aspartyl aminopeptidase (EC 3.4.11.21)
           {Homo sapiens}; contains Pfam profile PF02127:
           Aminopeptidase I zinc metalloprotease (M18)
          Length = 526

 Score = 28.7 bits (61), Expect = 3.7
 Identities = 10/28 (35%), Positives = 15/28 (53%)
 Frame = -2

Query: 600 DQWKLEPGGRCAFRMKAACAVTLLLGPR 517
           + W L+PGGR  F    +C V   +G +
Sbjct: 103 EDWNLKPGGRYFFTRNMSCLVAFAVGEK 130


>At2g45460.1 68415.m05654 forkhead-associated domain-containing
           protein / FHA domain-containing protein 
          Length = 915

 Score = 28.7 bits (61), Expect = 3.7
 Identities = 13/40 (32%), Positives = 27/40 (67%), Gaps = 1/40 (2%)
 Frame = +1

Query: 127 EEAKRLRAVNVKQ-EQEILQLRKELDEVRRELARVSQVLA 243
           +E K+++    K    E+++LR +LD  ++ELA+V+++ A
Sbjct: 282 QEIKQIKESTAKSFHNELIELRDQLDTKQKELAQVNKLSA 321


>At2g46180.1 68415.m05742 intracellular protein transport protein
           USO1-related similar to Intracellular protein transport
           protein USO1 (Swiss-Prot:P25386) [Saccharomyces
           cerevisiae]
          Length = 725

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 16/52 (30%), Positives = 30/52 (57%), Gaps = 2/52 (3%)
 Frame = +1

Query: 91  EATEDLVGYTAAEEAKRLRAVNVKQEQE--ILQLRKELDEVRRELARVSQVL 240
           ++TEDL  + ++ + ++      K++ E  + +L KEL+E RRE  +  Q L
Sbjct: 323 KSTEDLSRHLSSLDEEKAGTFPGKEDMEKSLQRLEKELEEARREKDKARQEL 374


>At5g19960.1 68418.m02376 RNA recognition motif (RRM)-containing
           protein low similarity to glycine-rich RNA-binding
           protein [Euphorbia esula] GI:2645699; contains
           INTERPRO:IPR000504 RNA-binding region RNP-1 (RNA
           recognition motif) (RRM) domain
          Length = 337

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 15/60 (25%), Positives = 36/60 (60%), Gaps = 2/60 (3%)
 Frame = +1

Query: 61  ALKELAVTVKEATE--DLVGYTAAEEAKRLRAVNVKQEQEILQLRKELDEVRRELARVSQ 234
           AL++  + ++E  E  ++V     +++KRL  + + +++ + Q RKEL ++ +  +RV +
Sbjct: 242 ALRDEVMVMEERLEVKEVVCSELQKKSKRLEDLLINEKKLVSQRRKELAKLHKSYSRVRE 301


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,018,154
Number of Sequences: 28952
Number of extensions: 281855
Number of successful extensions: 857
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 807
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 856
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1422784080
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)