Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--1405
(375 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC32H8.01c ||SPBP22H7.10c|conserved fungal protein|Schizosacch... 30 0.10
SPAC25B8.13c |isp7||2-OG-Fe|Schizosaccharomyces pombe|chr 1|||Ma... 27 0.96
SPCC70.03c |||proline dehydrogenase|Schizosaccharomyces pombe|ch... 25 3.9
SPAC29B12.07 |sec16||multidomain vesicle coat component Sec16|Sc... 25 3.9
SPAC1782.09c |clp1|flp1|Cdc14-related protein phosphatase Clp1/F... 25 3.9
SPCC18.01c |adg3|SPCC74.07c|beta-glucosidase Adg3 |Schizosacchar... 25 5.1
SPAC6G10.07 |||nuclear cap-binding complex large subunit |Schizo... 24 6.8
SPBP16F5.03c |||phosphatidylinositol kinase |Schizosaccharomyces... 24 6.8
SPBC31F10.13c |hip1|hir1|hira protein Hip1|Schizosaccharomyces p... 24 6.8
SPBP19A11.02c |||sequence orphan|Schizosaccharomyces pombe|chr 2... 24 6.8
SPCP1E11.06 |apl4||AP-1 adaptor complex gamma subunit Apl4 |Schi... 24 9.0
SPCC1322.03 |||TRP-like ion channel|Schizosaccharomyces pombe|ch... 24 9.0
SPAC17A5.15c |||glutamate-tRNA ligase |Schizosaccharomyces pombe... 24 9.0
SPAC23H4.14 |vam6|vps39|guanyl-nucleotide exchange factor Vma6|S... 24 9.0
SPAC9G1.06c |cyk3||cytokinesis protein Cyk3|Schizosaccharomyces ... 24 9.0
>SPBC32H8.01c ||SPBP22H7.10c|conserved fungal
protein|Schizosaccharomyces pombe|chr 2|||Manual
Length = 187
Score = 30.3 bits (65), Expect = 0.10
Identities = 14/38 (36%), Positives = 25/38 (65%)
Frame = +1
Query: 190 TRKPATVNTLTQPYESIRSTNTS*DTCNSKTRSKHKDL 303
T K V++ + ESI S+++S C+++T+SKH +L
Sbjct: 110 TEKEKDVDSASAENESINSSSSSSKECSTQTQSKHYNL 147
>SPAC25B8.13c |isp7||2-OG-Fe|Schizosaccharomyces pombe|chr
1|||Manual
Length = 397
Score = 27.1 bits (57), Expect = 0.96
Identities = 13/44 (29%), Positives = 22/44 (50%), Gaps = 2/44 (4%)
Frame = +3
Query: 117 YYDKAMPHDNHFIVAAADYAPESTHAEASYCQHPNTALRI--YP 242
Y+D+ + NH + A+ S A +C P T++R+ YP
Sbjct: 222 YHDQMLAFANHVMSLLAESLELSPDAFDEFCSDPTTSIRLLRYP 265
>SPCC70.03c |||proline dehydrogenase|Schizosaccharomyces pombe|chr
3|||Manual
Length = 492
Score = 25.0 bits (52), Expect = 3.9
Identities = 10/20 (50%), Positives = 14/20 (70%)
Frame = -1
Query: 81 VRGLDYCKDQRSSQRTALRR 22
+ LD CK++R+ R ALRR
Sbjct: 470 IDALDRCKEERAYYRQALRR 489
>SPAC29B12.07 |sec16||multidomain vesicle coat component
Sec16|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1995
Score = 25.0 bits (52), Expect = 3.9
Identities = 10/39 (25%), Positives = 21/39 (53%)
Frame = +1
Query: 142 ITTSSWPPLTTPQNRLTRKPATVNTLTQPYESIRSTNTS 258
++TSS+ P +N + R+P ++ L+ + + S S
Sbjct: 764 VSTSSYAPAANTRNAIIREPGILSPLSPRVQPVLSRRES 802
>SPAC1782.09c |clp1|flp1|Cdc14-related protein phosphatase
Clp1/Flp1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 537
Score = 25.0 bits (52), Expect = 3.9
Identities = 7/20 (35%), Positives = 11/20 (55%)
Frame = +1
Query: 106 RRNCTTIRRCHMITTSSWPP 165
R N + C+M+ +WPP
Sbjct: 96 RANAACLLACYMVLVQNWPP 115
>SPCC18.01c |adg3|SPCC74.07c|beta-glucosidase Adg3
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1131
Score = 24.6 bits (51), Expect = 5.1
Identities = 13/38 (34%), Positives = 21/38 (55%)
Frame = +1
Query: 145 TTSSWPPLTTPQNRLTRKPATVNTLTQPYESIRSTNTS 258
T SS+ + N L+ +P T ++ + ESI S NT+
Sbjct: 938 TASSYIASSASSNTLSTEPKTFSSSSTLSESISSINTN 975
>SPAC6G10.07 |||nuclear cap-binding complex large subunit
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 780
Score = 24.2 bits (50), Expect = 6.8
Identities = 17/72 (23%), Positives = 31/72 (43%)
Frame = +3
Query: 33 PFFVRNVDLYNNLGLEPIKKHLESASELYYDKAMPHDNHFIVAAADYAPESTHAEASYCQ 212
P F R +L+NN + + A+ ++ D ++ NH + A T + Y
Sbjct: 291 PSFKRFFELFNNFEIRTTPDASDVAASIFRDISVDVINHLEFNRVEAAQVLTDLDV-YFT 349
Query: 213 HPNTALRIYPIH 248
+ ALR P++
Sbjct: 350 YKTFALRGTPVN 361
>SPBP16F5.03c |||phosphatidylinositol kinase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 3699
Score = 24.2 bits (50), Expect = 6.8
Identities = 15/47 (31%), Positives = 23/47 (48%)
Frame = +1
Query: 112 NCTTIRRCHMITTSSWPPLTTPQNRLTRKPATVNTLTQPYESIRSTN 252
NC T RRC + PL++ L +P+++ TL + YE N
Sbjct: 3391 NCETRRRCLKFYIPAVIPLSSHIRLLEDQPSSI-TLQKIYEIYSERN 3436
>SPBC31F10.13c |hip1|hir1|hira protein Hip1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 932
Score = 24.2 bits (50), Expect = 6.8
Identities = 8/15 (53%), Positives = 11/15 (73%)
Frame = -2
Query: 173 VVSGGHDEVVIMWHR 129
+ SG D VVI+WH+
Sbjct: 89 LASGSDDRVVIIWHK 103
>SPBP19A11.02c |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 244
Score = 24.2 bits (50), Expect = 6.8
Identities = 16/44 (36%), Positives = 21/44 (47%), Gaps = 4/44 (9%)
Frame = +1
Query: 136 HMITTSSWPPLTTPQNRLTRKPAT-VNTLT---QPYESIRSTNT 255
H TT++ PP T+ T P T +NT T P + ST T
Sbjct: 77 HNSTTTTVPPTTSMNTTTTVPPTTSLNTTTTTAPPTTHVNSTTT 120
>SPCP1E11.06 |apl4||AP-1 adaptor complex gamma subunit Apl4
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 865
Score = 23.8 bits (49), Expect = 9.0
Identities = 9/21 (42%), Positives = 14/21 (66%)
Frame = +2
Query: 221 HSLTNLSDPLTRHKILAILKL 283
H++ N+SDP + KIL L +
Sbjct: 263 HNIGNISDPFLQVKILQFLSI 283
>SPCC1322.03 |||TRP-like ion channel|Schizosaccharomyces pombe|chr
3|||Manual
Length = 862
Score = 23.8 bits (49), Expect = 9.0
Identities = 11/30 (36%), Positives = 16/30 (53%)
Frame = -2
Query: 182 FWGVVSGGHDEVVIMWHRLIVVQFRRGLQV 93
F + + +E V+ W I VQF RG+ V
Sbjct: 446 FGSIYNSFREERVMFWIFPIAVQFMRGITV 475
>SPAC17A5.15c |||glutamate-tRNA ligase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 716
Score = 23.8 bits (49), Expect = 9.0
Identities = 9/17 (52%), Positives = 11/17 (64%)
Frame = +2
Query: 287 ASIRTLNRYFGNRYTGK 337
A LN+YF N+Y GK
Sbjct: 224 AKAALLNQYFANKYHGK 240
>SPAC23H4.14 |vam6|vps39|guanyl-nucleotide exchange factor
Vma6|Schizosaccharomyces pombe|chr 1|||Manual
Length = 905
Score = 23.8 bits (49), Expect = 9.0
Identities = 11/32 (34%), Positives = 20/32 (62%), Gaps = 1/32 (3%)
Frame = +3
Query: 30 APFFVRNVDLYNNLGLEPIKKHLESAS-ELYY 122
A F + +VD+Y N +PI K + A+ +++Y
Sbjct: 51 ADFVMEHVDVYPNFTKKPITKVVSCATQDIFY 82
>SPAC9G1.06c |cyk3||cytokinesis protein Cyk3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 886
Score = 23.8 bits (49), Expect = 9.0
Identities = 14/56 (25%), Positives = 27/56 (48%)
Frame = +3
Query: 66 NLGLEPIKKHLESASELYYDKAMPHDNHFIVAAADYAPESTHAEASYCQHPNTALR 233
+L E I+ +L+S ++YY + + ++ + V D A + HP AL+
Sbjct: 551 DLWCEVIEGYLKSPDDIYYTRDININHAWNVVTFDNEVRLIDASFASPTHPQQALK 606
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,454,563
Number of Sequences: 5004
Number of extensions: 25883
Number of successful extensions: 83
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 82
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 83
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 120195862
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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