Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1405
         (375 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_05_1050 - 33757432-33757664,33757767-33758645,33758720-337591...    28   2.7  
02_05_0471 - 29306334-29306398,29306579-29306775,29307744-29309665     27   3.6  
01_06_0501 - 29836545-29836640,29836752-29836855,29837034-298370...    27   6.3  
10_08_1034 + 22461397-22461702,22462311-22462524,22464936-224649...    26   8.4  
07_01_0174 - 1227871-1228043,1228303-1228423,1228519-1228588,122...    26   8.4  
05_06_0207 + 26377836-26378201,26379785-26379906,26380025-263802...    26   8.4  
01_06_1417 - 37189068-37190321                                         26   8.4  
01_01_0542 + 3975500-3975546,3976273-3976370,3976694-3976830,397...    26   8.4  

>02_05_1050 -
           33757432-33757664,33757767-33758645,33758720-33759109,
           33759488-33759613,33760497-33760557
          Length = 562

 Score = 27.9 bits (59), Expect = 2.7
 Identities = 10/24 (41%), Positives = 15/24 (62%)
 Frame = +1

Query: 106 RRNCTTIRRCHMITTSSWPPLTTP 177
           R + T +R  H + +S+W PLT P
Sbjct: 131 RPSVTRVRTPHKVASSAWKPLTQP 154


>02_05_0471 - 29306334-29306398,29306579-29306775,29307744-29309665
          Length = 727

 Score = 27.5 bits (58), Expect = 3.6
 Identities = 17/40 (42%), Positives = 22/40 (55%), Gaps = 1/40 (2%)
 Frame = +3

Query: 21  AVGAPFFVRNVDLYNNLG-LEPIKKHLESASELYYDKAMP 137
           A  A  FVR  DLYN  G L   K + E+A ++ Y K +P
Sbjct: 455 ATVASVFVRLADLYNKTGKLRESKSYCENALKI-YQKPIP 493


>01_06_0501 -
           29836545-29836640,29836752-29836855,29837034-29837081,
           29837188-29837305,29837812-29838007,29838089-29838210,
           29839409-29839831
          Length = 368

 Score = 26.6 bits (56), Expect = 6.3
 Identities = 12/27 (44%), Positives = 15/27 (55%)
 Frame = +3

Query: 144 NHFIVAAADYAPESTHAEASYCQHPNT 224
           NHF   AADY  E  H    Y ++P+T
Sbjct: 263 NHFCEMAADYHSEKPH-RLDYSKYPDT 288


>10_08_1034 +
           22461397-22461702,22462311-22462524,22464936-22464997,
           22465035-22465381,22465495-22465591
          Length = 341

 Score = 26.2 bits (55), Expect = 8.4
 Identities = 15/38 (39%), Positives = 17/38 (44%), Gaps = 1/38 (2%)
 Frame = +3

Query: 150 FIVAAADYAPESTHAEASYCQHPNTAL-RIYPIH*HVI 260
           + V AA Y     H E  Y QHP   L R  P+  H I
Sbjct: 36  YTVHAATYPHHHHHPEEEYQQHPRLKLFRADPLDYHAI 73


>07_01_0174 -
           1227871-1228043,1228303-1228423,1228519-1228588,
           1228877-1228953,1229215-1229393,1229558-1229684,
           1229849-1229861,1230351-1230378,1230426-1230516,
           1230870-1230956,1231239-1231276,1231426-1231464,
           1231553-1231699,1231899-1231958,1232033-1232111,
           1232429-1232517,1232906-1232967,1233238-1233427,
           1233929-1234068,1235813-1236147,1237086-1237133
          Length = 730

 Score = 26.2 bits (55), Expect = 8.4
 Identities = 12/27 (44%), Positives = 19/27 (70%), Gaps = 2/27 (7%)
 Frame = -2

Query: 176 GVVSGGHDEVVIMW--HRLIVVQFRRG 102
           G+VSGG D +V++W  H+  VV+  +G
Sbjct: 79  GLVSGGMDTLVLLWDLHKGEVVETMKG 105


>05_06_0207 +
           26377836-26378201,26379785-26379906,26380025-26380220,
           26380642-26380759,26380869-26380916,26380995-26381095,
           26381178-26381285
          Length = 352

 Score = 26.2 bits (55), Expect = 8.4
 Identities = 12/27 (44%), Positives = 15/27 (55%)
 Frame = +3

Query: 144 NHFIVAAADYAPESTHAEASYCQHPNT 224
           NHF   AADY  E  H    Y ++P+T
Sbjct: 244 NHFCEMAADYHSEKPHI-LDYTKYPDT 269


>01_06_1417 - 37189068-37190321
          Length = 417

 Score = 26.2 bits (55), Expect = 8.4
 Identities = 10/20 (50%), Positives = 13/20 (65%)
 Frame = -2

Query: 203 AGFRVSRFWGVVSGGHDEVV 144
           +  R+ RFWGVV    DE+V
Sbjct: 286 SNLRMLRFWGVVFDDEDEIV 305


>01_01_0542 +
           3975500-3975546,3976273-3976370,3976694-3976830,
           3977518-3977871,3977953-3978041,3978502-3978589,
           3978659-3978734,3978858-3978907,3979032-3979340,
           3979803-3979982,3980086-3980325,3980471-3980582,
           3980931-3981040,3981162-3981311,3981777-3981932,
           3982289-3982405,3982759-3982839,3983338-3983478
          Length = 844

 Score = 26.2 bits (55), Expect = 8.4
 Identities = 7/14 (50%), Positives = 12/14 (85%)
 Frame = -2

Query: 173 VVSGGHDEVVIMWH 132
           + +GGHD+ V++WH
Sbjct: 622 LATGGHDKKVVLWH 635


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,584,063
Number of Sequences: 37544
Number of extensions: 174666
Number of successful extensions: 570
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 552
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 570
length of database: 14,793,348
effective HSP length: 74
effective length of database: 12,015,092
effective search space used: 600754600
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)