Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1405
         (375 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_3810| Best HMM Match : PEPCK (HMM E-Value=0)                        32   0.13 
SB_37929| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.30 
SB_31260| Best HMM Match : rve (HMM E-Value=5.2e-25)                   30   0.53 
SB_48094| Best HMM Match : MMR_HSR1 (HMM E-Value=0.82)                 29   1.6  
SB_42815| Best HMM Match : rve (HMM E-Value=0.00022)                   29   1.6  
SB_609| Best HMM Match : tRNA-synt_1 (HMM E-Value=2.2e-09)             28   2.1  
SB_27157| Best HMM Match : CLPTM1 (HMM E-Value=0)                      28   2.8  
SB_18540| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   2.8  
SB_5480| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   2.8  
SB_30644| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   3.7  
SB_34753| Best HMM Match : WD40 (HMM E-Value=5.3e-20)                  27   3.7  
SB_50061| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   5.0  
SB_23576| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   5.0  
SB_13423| Best HMM Match : 7tm_1 (HMM E-Value=5.8e-26)                 27   5.0  
SB_46590| Best HMM Match : No HMM Matches (HMM E-Value=.)              26   8.7  
SB_30283| Best HMM Match : No HMM Matches (HMM E-Value=.)              26   8.7  
SB_16790| Best HMM Match : No HMM Matches (HMM E-Value=.)              26   8.7  

>SB_3810| Best HMM Match : PEPCK (HMM E-Value=0)
          Length = 707

 Score = 32.3 bits (70), Expect = 0.13
 Identities = 20/51 (39%), Positives = 25/51 (49%)
 Frame = +1

Query: 106 RRNCTTIRRCHMITTSSWPPLTTPQNRLTRKPATVNTLTQPYESIRSTNTS 258
           RR    IRR   + T+ W  L TP +RL  + AT   LT  Y  I  T +S
Sbjct: 92  RRANRQIRRKGSVITALWLRLNTPLSRLLPRSATSRALTFRYRYILRTMSS 142


>SB_37929| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 172

 Score = 31.1 bits (67), Expect = 0.30
 Identities = 19/61 (31%), Positives = 31/61 (50%)
 Frame = +1

Query: 106 RRNCTTIRRCHMITTSSWPPLTTPQNRLTRKPATVNTLTQPYESIRSTNTS*DTCNSKTR 285
           R    TI  C+  T ++   +T   N  +   ATV+T+T  Y + R+T ++   C S TR
Sbjct: 44  RATVATITNCYSATHATVANIT---NCYSATHATVSTITNCYSATRATASTITNCYSATR 100

Query: 286 S 288
           +
Sbjct: 101 A 101



 Score = 29.5 bits (63), Expect = 0.93
 Identities = 18/61 (29%), Positives = 30/61 (49%)
 Frame = +1

Query: 106 RRNCTTIRRCHMITTSSWPPLTTPQNRLTRKPATVNTLTQPYESIRSTNTS*DTCNSKTR 285
           R   +TI  C+  T ++   +T   N  +   ATV+T+T  Y + R+T  +   C S T 
Sbjct: 2   RATVSTITNCYSATRATVSSIT---NCYSATHATVSTITNCYSATRATVATITNCYSATH 58

Query: 286 S 288
           +
Sbjct: 59  A 59



 Score = 28.7 bits (61), Expect = 1.6
 Identities = 16/52 (30%), Positives = 28/52 (53%)
 Frame = +1

Query: 118 TTIRRCHMITTSSWPPLTTPQNRLTRKPATVNTLTQPYESIRSTNTS*DTCN 273
           +TI  C+  T ++   +T   N  +   ATV+T+T  Y ++R+T  +   CN
Sbjct: 76  STITNCYSATRATASTIT---NCYSATRATVSTITNCYSAMRATVATITNCN 124


>SB_31260| Best HMM Match : rve (HMM E-Value=5.2e-25)
          Length = 1962

 Score = 30.3 bits (65), Expect = 0.53
 Identities = 17/52 (32%), Positives = 25/52 (48%)
 Frame = +1

Query: 97   WSPRRNCTTIRRCHMITTSSWPPLTTPQNRLTRKPATVNTLTQPYESIRSTN 252
            W PR   +T    H+    S+   T P    T KPAT   ++QPY  + ++N
Sbjct: 990  WPPRYEDST-HFSHLWVVLSYDGSTPPPRDGTAKPATQPFVSQPYPPVDTSN 1040


>SB_48094| Best HMM Match : MMR_HSR1 (HMM E-Value=0.82)
          Length = 896

 Score = 28.7 bits (61), Expect = 1.6
 Identities = 14/28 (50%), Positives = 17/28 (60%)
 Frame = -1

Query: 174 RSQRRPR*SGYHVASPYRSTVPTRTPGV 91
           RS+  PR +G  +A P R   PTR PGV
Sbjct: 461 RSRHPPRTTGPELACPNRLPHPTRRPGV 488


>SB_42815| Best HMM Match : rve (HMM E-Value=0.00022)
          Length = 1514

 Score = 28.7 bits (61), Expect = 1.6
 Identities = 16/48 (33%), Positives = 22/48 (45%)
 Frame = +1

Query: 97  WSPRRNCTTIRRCHMITTSSWPPLTTPQNRLTRKPATVNTLTQPYESI 240
           W PR   +T    H+    S+   T P    T KPAT   ++QPY  +
Sbjct: 442 WPPRYGDST-HFSHLWVVLSYDESTPPPRDGTAKPATQPFVSQPYSPV 488


>SB_609| Best HMM Match : tRNA-synt_1 (HMM E-Value=2.2e-09)
          Length = 250

 Score = 28.3 bits (60), Expect = 2.1
 Identities = 13/44 (29%), Positives = 22/44 (50%), Gaps = 1/44 (2%)
 Frame = +3

Query: 93  HLESASELYYDK-AMPHDNHFIVAAADYAPESTHAEASYCQHPN 221
           H ++ S+LYY +  +  D    +  A   PE+   + + C HPN
Sbjct: 122 HKQTNSKLYYVRYKLDGDKEEYITIATVRPETILGDTAICVHPN 165


>SB_27157| Best HMM Match : CLPTM1 (HMM E-Value=0)
          Length = 1264

 Score = 27.9 bits (59), Expect = 2.8
 Identities = 16/46 (34%), Positives = 19/46 (41%)
 Frame = +3

Query: 90   KHLESASELYYDKAMPHDNHFIVAAADYAPESTHAEASYCQHPNTA 227
            K L+   EL       HD + I+AAAD   E      S   HP  A
Sbjct: 1036 KSLKEKVELLDVAVKMHDGNAIIAAADVKAEMERRNMSMTTHPRQA 1081


>SB_18540| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 286

 Score = 27.9 bits (59), Expect = 2.8
 Identities = 16/47 (34%), Positives = 21/47 (44%)
 Frame = +1

Query: 148 TSSWPPLTTPQNRLTRKPATVNTLTQPYESIRSTNTS*DTCNSKTRS 288
           T + P  TT     T    T  T T PY +  + NT+  T N+ T S
Sbjct: 106 TVTAPNATTTTPTATTTTTTTTTTTTPYATTTTPNTTTTTPNTTTTS 152



 Score = 26.6 bits (56), Expect = 6.5
 Identities = 24/85 (28%), Positives = 34/85 (40%)
 Frame = +1

Query: 28  ERRSL*GTLIFTII*ASNLLRNTWSPRRNCTTIRRCHMITTSSWPPLTTPQNRLTRKPAT 207
           +R  +  T   T   A+    N  +     TT       TT+ +   TTP N  T  P T
Sbjct: 90  KRELIAATATITTYTATVTAPNATTTTPTATTTTTTTTTTTTPYATTTTP-NTTTTTPNT 148

Query: 208 VNTLTQPYESIRSTNTS*DTCNSKT 282
             T T P  +  + NT+  T N+ T
Sbjct: 149 --TTTSPNATTTTPNTTTTTPNTTT 171


>SB_5480| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 335

 Score = 27.9 bits (59), Expect = 2.8
 Identities = 12/27 (44%), Positives = 15/27 (55%)
 Frame = -2

Query: 215 VLTVAGFRVSRFWGVVSGGHDEVVIMW 135
           + +   FR  R WG+VSGG D  V  W
Sbjct: 140 ICSTVQFRPHRPWGLVSGGMDYRVAHW 166


>SB_30644| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1887

 Score = 27.5 bits (58), Expect = 3.7
 Identities = 17/63 (26%), Positives = 24/63 (38%)
 Frame = +1

Query: 118  TTIRRCHMITTSSWPPLTTPQNRLTRKPATVNTLTQPYESIRSTNTS*DTCNSKTRSKHK 297
            TT+      TT      TT Q R TRKP T        +++R  +T      S+  +   
Sbjct: 1458 TTVPATKPPTTRKTTTATTTQGRTTRKPTTTAEPPTTVDNLRRISTKIKDSTSRPETSQT 1517

Query: 298  DLE 306
              E
Sbjct: 1518 QTE 1520


>SB_34753| Best HMM Match : WD40 (HMM E-Value=5.3e-20)
          Length = 645

 Score = 27.5 bits (58), Expect = 3.7
 Identities = 13/32 (40%), Positives = 19/32 (59%)
 Frame = -2

Query: 224 CVRVLTVAGFRVSRFWGVVSGGHDEVVIMWHR 129
           C+ +  V  F V+   G V+GG D VV+MW +
Sbjct: 49  CLTIHDVKDF-VATGQGYVTGGRDGVVVMWDK 79


>SB_50061| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1222

 Score = 27.1 bits (57), Expect = 5.0
 Identities = 13/38 (34%), Positives = 16/38 (42%)
 Frame = +1

Query: 133 CHMITTSSWPPLTTPQNRLTRKPATVNTLTQPYESIRS 246
           CH +   S  P   PQ RL + P    T  +P   I S
Sbjct: 295 CHRVNRRSRRPQRQPQQRLPQAPTVHATQEEPIAQISS 332


>SB_23576| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 248

 Score = 27.1 bits (57), Expect = 5.0
 Identities = 13/32 (40%), Positives = 19/32 (59%)
 Frame = +1

Query: 151 SSWPPLTTPQNRLTRKPATVNTLTQPYESIRS 246
           S+ PP+ T +N L  +PA V+T T  Y   R+
Sbjct: 193 STIPPIYTLRNVLMEQPAAVSTTTYLYSEKRA 224


>SB_13423| Best HMM Match : 7tm_1 (HMM E-Value=5.8e-26)
          Length = 375

 Score = 27.1 bits (57), Expect = 5.0
 Identities = 10/29 (34%), Positives = 16/29 (55%)
 Frame = +1

Query: 73  ASNLLRNTWSPRRNCTTIRRCHMITTSSW 159
           A++   N + P +   TI+RCH+I    W
Sbjct: 121 ATDRFFNVFFPHKRIITIKRCHIIIVLIW 149


>SB_46590| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 972

 Score = 26.2 bits (55), Expect = 8.7
 Identities = 15/54 (27%), Positives = 25/54 (46%)
 Frame = +1

Query: 130 RCHMITTSSWPPLTTPQNRLTRKPATVNTLTQPYESIRSTNTS*DTCNSKTRSK 291
           R   +T+ S P    P+  L R PA  +T + P     ++     +C + TRS+
Sbjct: 98  RSLQLTSVSEPIQANPRKMLVRSPAVRSTSSPPLPPDDTSEVITHSCVTNTRSE 151


>SB_30283| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1417

 Score = 26.2 bits (55), Expect = 8.7
 Identities = 15/41 (36%), Positives = 22/41 (53%), Gaps = 2/41 (4%)
 Frame = +1

Query: 148 TSSWPPLTT--PQNRLTRKPATVNTLTQPYESIRSTNTS*D 264
           TS+ PP TT  P  + T  P +  ++ QP+  + ST T  D
Sbjct: 709 TSTSPPQTTTSPSQQTTSPPPSSPSIGQPWIPVTSTPTHAD 749


>SB_16790| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1902

 Score = 26.2 bits (55), Expect = 8.7
 Identities = 12/38 (31%), Positives = 19/38 (50%)
 Frame = +1

Query: 127  RRCHMITTSSWPPLTTPQNRLTRKPATVNTLTQPYESI 240
            RRC + T+  W P+ TP  +L      +  L +P E +
Sbjct: 1036 RRCKLTTSGPWLPV-TPSVKLRDVTVQIKPLKKPNECV 1072


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,160,203
Number of Sequences: 59808
Number of extensions: 205560
Number of successful extensions: 714
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 604
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 713
length of database: 16,821,457
effective HSP length: 74
effective length of database: 12,395,665
effective search space used: 619783250
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)