Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1405
         (375 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

D38024-1|BAA07227.1|  853|Homo sapiens facioscapulohumeral muscu...    31   1.2  
M94131-1|AAA59163.1| 1270|Homo sapiens mucin protein.                  29   4.9  
M74027-1|AAA59875.1|  573|Homo sapiens mucin protein.                  29   4.9  
L21998-1|AAB95295.1| 5179|Homo sapiens mucin protein.                  29   4.9  
L48689-1|AAC41946.1|   60|Homo sapiens voltage-dependent Na+ cha...    29   6.5  
AK092241-1|BAC03835.1|  901|Homo sapiens protein ( Homo sapiens ...    28   8.6  

>D38024-1|BAA07227.1|  853|Homo sapiens facioscapulohumeral muscular
           dystrophy protein.
          Length = 853

 Score = 31.1 bits (67), Expect = 1.2
 Identities = 22/66 (33%), Positives = 28/66 (42%), Gaps = 1/66 (1%)
 Frame = -1

Query: 216 GVDSSWLPRESILGRSQRRP-R*SGYHVASPYRSTVPTRTPGVS**VRGLDYCKDQRSSQ 40
           G  ++ +P ES++G     P R  G    S   ST P R PG     RG   CK  R   
Sbjct: 760 GACATHVPGESVVGLGPGSPGRRGGVGTPSRGSSTSPARAPGTPPPPRGRGRCKASRRPP 819

Query: 39  RTALRR 22
           R +  R
Sbjct: 820 RRSRSR 825


>M94131-1|AAA59163.1| 1270|Homo sapiens mucin protein.
          Length = 1270

 Score = 29.1 bits (62), Expect = 4.9
 Identities = 16/46 (34%), Positives = 24/46 (52%), Gaps = 1/46 (2%)
 Frame = +1

Query: 94   TWSPRRNCTTIRRCHMITTSSWPPLTTPQNRLTRKPA-TVNTLTQP 228
            T +P    TT     + TT++ PP TTP + +T  P+    T+T P
Sbjct: 1029 TTTPSPPTTTTPSPPITTTTTPPPTTTPSSPITTTPSPPTTTMTTP 1074


>M74027-1|AAA59875.1|  573|Homo sapiens mucin protein.
          Length = 573

 Score = 29.1 bits (62), Expect = 4.9
 Identities = 16/46 (34%), Positives = 24/46 (52%), Gaps = 1/46 (2%)
 Frame = +1

Query: 94  TWSPRRNCTTIRRCHMITTSSWPPLTTPQNRLTRKPA-TVNTLTQP 228
           T +P    TT     + TT++ PP TTP + +T  P+    T+T P
Sbjct: 312 TTTPSPPTTTTPSPPITTTTTPPPTTTPSSPITTTPSPPTTTMTTP 357


>L21998-1|AAB95295.1| 5179|Homo sapiens mucin protein.
          Length = 5179

 Score = 29.1 bits (62), Expect = 4.9
 Identities = 16/46 (34%), Positives = 24/46 (52%), Gaps = 1/46 (2%)
 Frame = +1

Query: 94   TWSPRRNCTTIRRCHMITTSSWPPLTTPQNRLTRKPA-TVNTLTQP 228
            T +P    TT     + TT++ PP TTP + +T  P+    T+T P
Sbjct: 1654 TTTPSPPTTTTPSPPITTTTTPPPTTTPSSPITTTPSPPTTTMTTP 1699


>L48689-1|AAC41946.1|   60|Homo sapiens voltage-dependent Na+
           channel beta-1 subunit protein.
          Length = 60

 Score = 28.7 bits (61), Expect = 6.5
 Identities = 19/48 (39%), Positives = 22/48 (45%), Gaps = 1/48 (2%)
 Frame = +1

Query: 88  RNTW-SPRRNCTTIRRCHMITTSSWPPLTTPQNRLTRKPATVNTLTQP 228
           RNTW SP +   T R       S WP    P  RL  +PA + TL  P
Sbjct: 1   RNTWPSPLKAKRTAR------ASRWPNSPGPGPRLKEEPAVMGTLQAP 42


>AK092241-1|BAC03835.1|  901|Homo sapiens protein ( Homo sapiens
           cDNA FLJ34922 fis, clone NT2RP7003084, weakly similar to
           Mus musculus schlafen3 (Slfn3) mRNA. ).
          Length = 901

 Score = 28.3 bits (60), Expect = 8.6
 Identities = 21/63 (33%), Positives = 30/63 (47%), Gaps = 4/63 (6%)
 Frame = +1

Query: 130 RCHMITTSSWPPLTTPQNRLTRKPATVNTLTQPYE----SIRSTNTS*DTCNSKTRSKHK 297
           RC  I   SW     P++R + KP   +  +  Y     S+RST++    C  KT+ K K
Sbjct: 101 RCFYIFVKSWSSGPFPEDR-SFKPRLCSLSSSLYRRSETSVRSTDSREAFCFLKTKRKPK 159

Query: 298 DLE 306
            LE
Sbjct: 160 ILE 162


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 51,537,571
Number of Sequences: 237096
Number of extensions: 962924
Number of successful extensions: 5706
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 5655
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5706
length of database: 76,859,062
effective HSP length: 81
effective length of database: 57,654,286
effective search space used: 2479134298
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)