Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1405
         (375 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    25   0.39 
AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice...    23   0.89 
DQ000307-1|AAY21180.1|  423|Apis mellifera major royal jelly pro...    23   1.6  
AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic ac...    20   8.3  

>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
            protein.
          Length = 1370

 Score = 24.6 bits (51), Expect = 0.39
 Identities = 12/32 (37%), Positives = 20/32 (62%)
 Frame = +1

Query: 163  PLTTPQNRLTRKPATVNTLTQPYESIRSTNTS 258
            P ++PQ RLT   A  + +T P  ++ +TNT+
Sbjct: 1286 PPSSPQPRLTVNHAYRDAVTVPGNNLIATNTT 1317


>AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice
           variant B protein.
          Length = 810

 Score = 23.4 bits (48), Expect = 0.89
 Identities = 21/74 (28%), Positives = 32/74 (43%), Gaps = 6/74 (8%)
 Frame = +3

Query: 33  PFFVRNVDLYNNLGLEPIK-----KHLESASELYYDK-AMPHDNHFIVAAADYAPESTHA 194
           P F RN+D YNN  L+  K       L + ++LY  K  +   N  +    + A    HA
Sbjct: 365 PKFPRNIDEYNNNDLDTKKWNNKISALRALNDLYNVKNTLDSYNGSMEINQNIAQNIDHA 424

Query: 195 EASYCQHPNTALRI 236
           + +   + N  L I
Sbjct: 425 KNTIIDYRNNDLSI 438


>DQ000307-1|AAY21180.1|  423|Apis mellifera major royal jelly
           protein 9 protein.
          Length = 423

 Score = 22.6 bits (46), Expect = 1.6
 Identities = 8/33 (24%), Positives = 15/33 (45%)
 Frame = +1

Query: 94  TWSPRRNCTTIRRCHMITTSSWPPLTTPQNRLT 192
           +W+  +NC+ I   + I    W  L    N ++
Sbjct: 112 SWAKNQNCSGITSVYRIAIDEWDRLWVLDNGIS 144


>AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha7-1 protein.
          Length = 555

 Score = 20.2 bits (40), Expect = 8.3
 Identities = 13/51 (25%), Positives = 20/51 (39%)
 Frame = +3

Query: 54  DLYNNLGLEPIKKHLESASELYYDKAMPHDNHFIVAAADYAPESTHAEASY 206
           +L NN+   P   H        +  A PH +H   A   +   +  A +SY
Sbjct: 403 NLLNNVYSTPGPHHHTMGHGHSHIHATPHHHHSHAATPHHQHSTPLAHSSY 453


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 97,768
Number of Sequences: 438
Number of extensions: 1613
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 51
effective length of database: 124,005
effective search space used:  9052365
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)