Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--1404
(713 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC16A3.15c |nda2||tubulin alpha 1|Schizosaccharomyces pombe|ch... 161 7e-41
SPBC800.05c |tub1|atb2, alp2, ban5|tubulin alpha 2|Schizosacchar... 161 9e-41
SPBC26H8.07c |nda3|ben1, alp12|tubulin beta |Schizosaccharomyces... 94 2e-20
SPBC32F12.04 |tug1|gtb1|gamma-tubulin|Schizosaccharomyces pombe|... 64 3e-11
SPCC576.05 |||nucear export factor|Schizosaccharomyces pombe|chr... 29 0.87
SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||... 27 2.0
SPAC13F5.04c |||endosomal sorting protein |Schizosaccharomyces p... 26 6.1
SPAC16A10.01 |||DUF1212 family protein|Schizosaccharomyces pombe... 26 6.1
SPCC645.06c |rgf3|lad1|RhoGEF Rgf3|Schizosaccharomyces pombe|chr... 26 6.1
SPCC16A11.08 |atg20||sorting nexin Atg20|Schizosaccharomyces pom... 25 8.1
>SPBC16A3.15c |nda2||tubulin alpha 1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 455
Score = 161 bits (392), Expect = 7e-41
Identities = 70/123 (56%), Positives = 92/123 (74%)
Frame = +3
Query: 255 PRAVFVDLEPTVVDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIVDLVLDRI 434
PR+++VDLEP V+D+VRTG Y+ LFHPEQ++TGKEDA+NNYARGHYT+GKE++D VL+RI
Sbjct: 67 PRSIYVDLEPNVIDQVRTGPYKDLFHPEQMVTGKEDASNNYARGHYTVGKEMIDSVLERI 126
Query: 435 RKLADQCTGLQGFLIFHXXXXXXXXXXLPY*WSVSPLTTARSLNWSFAIYPAPQVSTAVV 614
R++AD C+GLQGFL+FH + + N F++YPAPQVST+VV
Sbjct: 127 RRMADNCSGLQGFLVFHSFGGGTGSGLGALLLERLNMEYGKKSNLQFSVYPAPQVSTSVV 186
Query: 615 EPY 623
EPY
Sbjct: 187 EPY 189
Score = 95.1 bits (226), Expect = 9e-21
Identities = 48/68 (70%), Positives = 50/68 (73%), Gaps = 5/68 (7%)
Frame = +1
Query: 70 MRECISVHVGQAGVQIGNACWELYCLEHGIQPDGQMPTD-----KTIGGGDDSFNTFFSE 234
MRE ISVHVGQAGVQIGNACWELYCLEHGI PDG PT+ K +D F TFFSE
Sbjct: 1 MREVISVHVGQAGVQIGNACWELYCLEHGIGPDG-FPTENSEVHKNNSYLNDGFGTFFSE 59
Query: 235 TGAGKHVP 258
TG GK VP
Sbjct: 60 TGQGKFVP 67
Score = 35.1 bits (77), Expect = 0.010
Identities = 13/18 (72%), Positives = 16/18 (88%)
Frame = +1
Query: 625 NSILTTHTTLEHSDCAFM 678
NS+LTTH TL++SDC FM
Sbjct: 190 NSVLTTHATLDNSDCTFM 207
>SPBC800.05c |tub1|atb2, alp2, ban5|tubulin alpha
2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 449
Score = 161 bits (391), Expect = 9e-41
Identities = 74/137 (54%), Positives = 93/137 (67%)
Frame = +3
Query: 213 FQHFLQRDRSWQARPRAVFVDLEPTVVDEVRTGTYRQLFHPEQLITGKEDAANNYARGHY 392
F F + PR+++VDLEP V+D+VRTG YR LFHPEQLITGKEDA+NNYARGHY
Sbjct: 49 FSTFFSETGQGKYVPRSIYVDLEPNVIDQVRTGPYRDLFHPEQLITGKEDASNNYARGHY 108
Query: 393 TIGKEIVDLVLDRIRKLADQCTGLQGFLIFHXXXXXXXXXXLPY*WSVSPLTTARSLNWS 572
T+GKE+VD V D+IR++AD C+GLQGFL+FH + +
Sbjct: 109 TVGKELVDEVTDKIRRIADNCSGLQGFLVFHSFGGGTGSGFGALLLERLAMEYTKKSKLQ 168
Query: 573 FAIYPAPQVSTAVVEPY 623
F++YPAPQVST+VVEPY
Sbjct: 169 FSVYPAPQVSTSVVEPY 185
Score = 102 bits (244), Expect = 6e-23
Identities = 44/63 (69%), Positives = 49/63 (77%)
Frame = +1
Query: 70 MRECISVHVGQAGVQIGNACWELYCLEHGIQPDGQMPTDKTIGGGDDSFNTFFSETGAGK 249
MRE IS+HVGQAG QIGNACWELYCLEHGIQP+G M + D F+TFFSETG GK
Sbjct: 1 MREIISIHVGQAGTQIGNACWELYCLEHGIQPNGYMNPETASQNSDGGFSTFFSETGQGK 60
Query: 250 HVP 258
+VP
Sbjct: 61 YVP 63
Score = 32.3 bits (70), Expect = 0.071
Identities = 12/18 (66%), Positives = 15/18 (83%)
Frame = +1
Query: 625 NSILTTHTTLEHSDCAFM 678
NS+LTTH TL+ +DC FM
Sbjct: 186 NSVLTTHATLDLADCTFM 203
>SPBC26H8.07c |nda3|ben1, alp12|tubulin beta |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 448
Score = 94.3 bits (224), Expect = 2e-20
Identities = 49/123 (39%), Positives = 68/123 (55%)
Frame = +3
Query: 255 PRAVFVDLEPTVVDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIVDLVLDRI 434
PRAV VDLEP +D V++G + LF P+ +I G+ A N +A+GHYT G E+ D VLD +
Sbjct: 61 PRAVLVDLEPGTMDAVKSGKFGNLFRPDNIIYGQSGAGNIWAKGHYTEGAELADAVLDVV 120
Query: 435 RKLADQCTGLQGFLIFHXXXXXXXXXXLPY*WSVSPLTTARSLNWSFAIYPAPQVSTAVV 614
R+ A+ C LQGF + H S + +F++ PAP+ S VV
Sbjct: 121 RREAEACDALQGFQLTHSLGGGTGSGMGTLLLSKIREEYPDRMMATFSVAPAPKSSDTVV 180
Query: 615 EPY 623
EPY
Sbjct: 181 EPY 183
Score = 44.4 bits (100), Expect = 2e-05
Identities = 22/63 (34%), Positives = 30/63 (47%)
Frame = +1
Query: 70 MRECISVHVGQAGVQIGNACWELYCLEHGIQPDGQMPTDKTIGGGDDSFNTFFSETGAGK 249
MRE + + GQ G Q+G A W EHG+ G T + N +F+E GK
Sbjct: 1 MREIVHIQAGQCGNQVGAAFWSTIADEHGLDSAGIY--HGTSEAQHERLNVYFNEAAGGK 58
Query: 250 HVP 258
+VP
Sbjct: 59 YVP 61
>SPBC32F12.04 |tug1|gtb1|gamma-tubulin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 446
Score = 63.7 bits (148), Expect = 3e-11
Identities = 38/126 (30%), Positives = 65/126 (51%), Gaps = 3/126 (2%)
Frame = +3
Query: 255 PRAVFVDLEPTVVDEVRTGTYRQLFHPEQLITGKE--DAANNYARGHYTIGKEIVDLVLD 428
PRA+ +DLEP VV+ + + TY L++PE ++ K A NN+A G Y+ + I + ++D
Sbjct: 62 PRAILIDLEPRVVNNILSDTYGSLYNPENILITKNGGGAGNNWANG-YSHAERIFEDIMD 120
Query: 429 RIRKLADQCTGLQGFLIFHXXXXXXXXXXLPY*WSVSPLTTARSLNWSFAIYPAPQ-VST 605
I + AD L+GF + H + + + +++++P Q VS
Sbjct: 121 MIDREADGSDSLEGFSLLHSIAGGTGSGLGSFLLERLNDRYPKKIIQTYSVFPNSQSVSD 180
Query: 606 AVVEPY 623
VV+PY
Sbjct: 181 VVVQPY 186
Score = 52.4 bits (120), Expect = 6e-08
Identities = 25/62 (40%), Positives = 37/62 (59%)
Frame = +1
Query: 73 RECISVHVGQAGVQIGNACWELYCLEHGIQPDGQMPTDKTIGGGDDSFNTFFSETGAGKH 252
RE I++ GQ G QIG+ W+ CLEHGI PDG + + T G D + FF ++ ++
Sbjct: 3 REIITLQAGQCGNQIGSQFWQQLCLEHGIGPDGTLESFAT--EGVDRKDVFFYQSDDTRY 60
Query: 253 VP 258
+P
Sbjct: 61 IP 62
>SPCC576.05 |||nucear export factor|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1024
Score = 28.7 bits (61), Expect = 0.87
Identities = 13/38 (34%), Positives = 17/38 (44%)
Frame = -1
Query: 305 ADLINNSRFKIDEDSTGTCLPAPVSLKKVLKESSPPPM 192
AD+IN SR+ ID S T + L P P+
Sbjct: 455 ADIINGSRYNIDRVSPNTAFSTNIPLSLPFANKEPQPI 492
>SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 534
Score = 27.5 bits (58), Expect = 2.0
Identities = 16/36 (44%), Positives = 20/36 (55%)
Frame = +2
Query: 149 STASSLMARCPQTRPSGVETILSTLSSARPELASTS 256
ST SSL + ++PS T ST SSA P S+S
Sbjct: 173 STFSSLSSSTSSSQPSVSSTSSSTFSSAAPTSTSSS 208
Score = 25.4 bits (53), Expect = 8.1
Identities = 20/61 (32%), Positives = 30/61 (49%), Gaps = 1/61 (1%)
Frame = +2
Query: 77 SASLYTLAKPESRSVMPAGSFTAWSTASSL-MARCPQTRPSGVETILSTLSSARPELAST 253
S+S + + S S P+ S ++ T+SSL + P T S T S SS+ AS+
Sbjct: 206 SSSYLSSSSVVSSSSSPSSSSSSTLTSSSLSTSSIPSTSSSSSSTSSSLSSSSSSSTASS 265
Query: 254 S 256
S
Sbjct: 266 S 266
>SPAC13F5.04c |||endosomal sorting protein |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 277
Score = 25.8 bits (54), Expect = 6.1
Identities = 23/76 (30%), Positives = 34/76 (44%)
Frame = +2
Query: 32 ILHLSIEKKLKSKCVSASLYTLAKPESRSVMPAGSFTAWSTASSLMARCPQTRPSGVETI 211
I LSI K +K C +L +A P+ ++ P+ T SS + T+ + VET
Sbjct: 16 ISFLSITKSIKF-CKLRALQ-VANPQRKAKTPSNHATEELQQSSTNSTTLPTQEAAVETN 73
Query: 212 LSTLSSARPELASTSP 259
S L +TSP
Sbjct: 74 ASASHETSFALPTTSP 89
>SPAC16A10.01 |||DUF1212 family protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 830
Score = 25.8 bits (54), Expect = 6.1
Identities = 13/46 (28%), Positives = 25/46 (54%)
Frame = -1
Query: 557 SCRSQRRDAPSIRK*TRAGTSTEGVEDQESLQTGTLVSELADSVQN 420
S + SIR +R+ +S+ G + Q S+Q+GT ++D ++
Sbjct: 98 SSQKSSNSRKSIRSQSRSRSSSVGSDSQASIQSGTNSEVVSDDEED 143
>SPCC645.06c |rgf3|lad1|RhoGEF Rgf3|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1275
Score = 25.8 bits (54), Expect = 6.1
Identities = 13/22 (59%), Positives = 13/22 (59%)
Frame = +3
Query: 168 WPDAHRQDHRGWRRFFQHFLQR 233
W A R D R R FQHFLQR
Sbjct: 590 WLAACRSDPRCRRLDFQHFLQR 611
>SPCC16A11.08 |atg20||sorting nexin Atg20|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 534
Score = 25.4 bits (53), Expect = 8.1
Identities = 15/41 (36%), Positives = 21/41 (51%)
Frame = +2
Query: 59 LKSKCVSASLYTLAKPESRSVMPAGSFTAWSTASSLMARCP 181
L+S +L+ P SR++ P S + STASSL P
Sbjct: 170 LRSSMPLVMANSLSPPSSRALKPIHSLSNPSTASSLEPSSP 210
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,949,517
Number of Sequences: 5004
Number of extensions: 61221
Number of successful extensions: 205
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 187
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 198
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 333194204
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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