Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1401
         (633 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1565.07c |||TATA binding protein interacting protein |Schizo...    26   3.9  
SPAC13F5.04c |||endosomal sorting protein |Schizosaccharomyces p...    26   5.2  
SPAC17A2.12 |||ATP-dependent DNA helicase|Schizosaccharomyces po...    25   9.1  

>SPAC1565.07c |||TATA binding protein interacting protein
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1220

 Score = 26.2 bits (55), Expect = 3.9
 Identities = 13/52 (25%), Positives = 24/52 (46%)
 Frame = +1

Query: 445  SVARLNYELEQSVTGSGKLHYASRTDWHTIPQWTPCAPTLLTSYKEVILRAV 600
            S+  L + L+ SV G    HY        + +   C+P+++    + IL A+
Sbjct: 1097 SLNHLTHFLQVSVMGLEDEHYIKLVSLSILEKLVDCSPSIIDEQVDTILEAL 1148


>SPAC13F5.04c |||endosomal sorting protein |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 277

 Score = 25.8 bits (54), Expect = 5.2
 Identities = 18/53 (33%), Positives = 28/53 (52%), Gaps = 1/53 (1%)
 Frame = -2

Query: 362 SVKFSFVSVDMGRS-RGAAHGGTAASRGVSTSSIADRHRPPRTTIIFSTSSLI 207
           S+  +  ++D  RS R ++H  + +     TS   D HRPP  T I +TS+ I
Sbjct: 142 SITENLPTIDPTRSTRSSSHIQSLSPESKQTS---DGHRPPSPTSITTTSTSI 191


>SPAC17A2.12 |||ATP-dependent DNA helicase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 897

 Score = 25.0 bits (52), Expect = 9.1
 Identities = 20/67 (29%), Positives = 31/67 (46%)
 Frame = -1

Query: 633 IPCNHMHWCHEDRP*YNLLVGGKEGRRTWCPLRDRMPICSARIV*LSRTSHRLL*FIIKP 454
           IPC H   C E     ++LVG K G  +   +  + P+C   IV  S     +L  I  P
Sbjct: 620 IPCGHFT-CQECM---SMLVGQKYGSSSTSTIIAKCPMCRGNIVQDSLVDATILQAIHGP 675

Query: 453 SDARERL 433
            ++ ++L
Sbjct: 676 LNSLKQL 682


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,197,458
Number of Sequences: 5004
Number of extensions: 38138
Number of successful extensions: 107
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 104
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 107
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 281707720
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)