Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1401
         (633 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_04_0004 + 12013207-12013280,12013311-12013756,12013865-12014715     29   2.3  
09_02_0450 + 9468495-9468528,9468947-9469062,9470031-9470858,947...    29   4.1  
02_05_0683 + 30877731-30878243                                         28   5.4  
04_04_1154 - 31297628-31298020,31298150-31298300,31298389-312986...    28   7.1  
11_04_0318 + 16336356-16336358,16337254-16337484,16337580-163376...    27   9.4  

>11_04_0004 + 12013207-12013280,12013311-12013756,12013865-12014715
          Length = 456

 Score = 29.5 bits (63), Expect = 2.3
 Identities = 12/27 (44%), Positives = 14/27 (51%)
 Frame = +2

Query: 500 YTMRAEQIGIRSRSGHHVRRPSLPPTR 580
           Y    E +G+ S  G H RRP  PP R
Sbjct: 117 YDAEDESVGLHSDGGDHHRRPRQPPRR 143


>09_02_0450 +
           9468495-9468528,9468947-9469062,9470031-9470858,
           9470955-9471107,9471194-9471604
          Length = 513

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 10/28 (35%), Positives = 18/28 (64%)
 Frame = +3

Query: 489 FGKATLCEQNRLAYDPAVDTMCADPPYL 572
           FG+++L +  R+ Y   +D  CA+ PY+
Sbjct: 285 FGESSLVKNLRIGYSSVLDHACAELPYI 312


>02_05_0683 + 30877731-30878243
          Length = 170

 Score = 28.3 bits (60), Expect = 5.4
 Identities = 13/25 (52%), Positives = 18/25 (72%)
 Frame = -2

Query: 329 GRSRGAAHGGTAASRGVSTSSIADR 255
           GR+R A  GG+ AS G ST+++A R
Sbjct: 118 GRARAAGPGGSGASDGGSTAAMAAR 142


>04_04_1154 -
           31297628-31298020,31298150-31298300,31298389-31298620,
           31298700-31298910,31299137-31299255,31299341-31299415,
           31299991-31300189,31300258-31300664,31300775-31300839,
           31300967-31301011,31301449-31301520,31301597-31301671,
           31301912-31301983,31302178-31302249,31302525-31302596,
           31302880-31302951,31303056-31303127,31304064-31304135,
           31304375-31304561,31304686-31304815
          Length = 930

 Score = 27.9 bits (59), Expect = 7.1
 Identities = 11/30 (36%), Positives = 16/30 (53%)
 Frame = +3

Query: 486 WFGKATLCEQNRLAYDPAVDTMCADPPYLL 575
           W GK T C  ++  Y PA+  + A P + L
Sbjct: 512 WAGKGTCCIPHQGYYGPAISALSATPIFAL 541


>11_04_0318 +
           16336356-16336358,16337254-16337484,16337580-16337654,
           16337741-16337839,16339010-16339121,16339586-16339713,
           16340022-16340141,16340967-16341047,16341460-16341537,
           16341616-16341708,16341880-16341934,16342795-16342871,
           16343008-16343079,16343159-16343242,16343620-16343739,
           16343824-16343892,16344721-16344798,16345684-16345822,
           16345990-16346154,16346239-16346384,16346501-16346680,
           16346834-16346922,16346997-16347028,16347120-16347226
          Length = 810

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 20/66 (30%), Positives = 32/66 (48%), Gaps = 1/66 (1%)
 Frame = -2

Query: 386 FLFTLTL*SVKFSFVSVDMGRSRGAAHGGTAASRGVSTSSIADRHRPPRTTIIFST-SSL 210
           FL    + +V F  + V M   +    G TAA+    + +I+D    PRT +  +T  S 
Sbjct: 215 FLVRDPMPAVYFFLIDVSMNAIQT---GSTAAACSAISQAISDLPEGPRTMVGIATFDSA 271

Query: 209 IHLYAI 192
           IH Y++
Sbjct: 272 IHFYSL 277


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,996,371
Number of Sequences: 37544
Number of extensions: 273309
Number of successful extensions: 886
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 867
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 886
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1549385732
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)