Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1401
         (633 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_3464| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   3.1  
SB_26475| Best HMM Match : Cadherin (HMM E-Value=0.009)                29   3.1  
SB_2394| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   5.5  

>SB_3464| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1462

 Score = 29.1 bits (62), Expect = 3.1
 Identities = 18/64 (28%), Positives = 29/64 (45%)
 Frame = +1

Query: 208  ISDEVLKIIVVRGGRCRSAMLLVETPREAAVPPCAAPLDLPMSTLTKLNFTDYSVKVNKN 387
            +SD   K I + G   + A++L   P +A  PP  APL++       +N  D   K  + 
Sbjct: 1275 VSDINAKKIRMTGFAPKDAIMLRRVPLKAEKPPLEAPLEVGTEVYIAVNEEDLQDKGRRR 1334

Query: 388  YPET 399
              +T
Sbjct: 1335 ATDT 1338


>SB_26475| Best HMM Match : Cadherin (HMM E-Value=0.009)
          Length = 340

 Score = 29.1 bits (62), Expect = 3.1
 Identities = 17/38 (44%), Positives = 20/38 (52%), Gaps = 1/38 (2%)
 Frame = +1

Query: 244 GGRCRSAMLLVETPREAAVPPCAAPLDL-PMSTLTKLN 354
           G RCRS       P    +PP   P+DL  MSTL+K N
Sbjct: 153 GLRCRSYYSPPPQPPPPPLPPPPPPIDLVDMSTLSKFN 190


>SB_2394| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 590

 Score = 28.3 bits (60), Expect = 5.5
 Identities = 17/92 (18%), Positives = 44/92 (47%)
 Frame = +1

Query: 202 KWISDEVLKIIVVRGGRCRSAMLLVETPREAAVPPCAAPLDLPMSTLTKLNFTDYSVKVN 381
           K++++++  +++   G   SA  + E  ++ +         L   ++++L ++   V ++
Sbjct: 197 KYVNNQLEHLLLEYRGLQDSAAEIKERYKQGSGGVTELTRSLAQVSISELTYSMAQVSIS 256

Query: 382 KNYPETSDQRDNRLNYEQALASVARLNYELEQ 477
           +     +    + LNY  A  S++ LNY + Q
Sbjct: 257 ELNYSMAQISISELNYSMAQVSISELNYSMAQ 288



 Score = 28.3 bits (60), Expect = 5.5
 Identities = 14/62 (22%), Positives = 30/62 (48%)
 Frame = +1

Query: 337 TLTKLNFTDYSVKVNKNYPETSDQRDNRLNYEQALASVARLNYELEQSVTGSGKLHYASR 516
           ++++LN++   + +++     +    + LNY  A  S++ LNY + Q      K   A  
Sbjct: 254 SISELNYSMAQISISELNYSMAQVSISELNYSMAQVSISELNYSMAQVSISELKYSMAQI 313

Query: 517 TD 522
           T+
Sbjct: 314 TE 315


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,042,865
Number of Sequences: 59808
Number of extensions: 313495
Number of successful extensions: 829
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 792
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 827
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1584657875
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)