Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1401
         (633 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667193-1|ABG75745.1|  510|Apis mellifera cys-loop ligand-gated...    23   1.9  
DQ244075-1|ABB36785.1|  548|Apis mellifera cytochrome P450 monoo...    23   1.9  
AY273778-1|AAP33487.1|  427|Apis mellifera ultraspiracle protein...    21   7.5  
AF263459-1|AAF73057.1|  427|Apis mellifera ultraspiracle protein...    21   7.5  
AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter...    21   9.9  
AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter...    21   9.9  

>DQ667193-1|ABG75745.1|  510|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 510

 Score = 23.4 bits (48), Expect = 1.9
 Identities = 11/30 (36%), Positives = 15/30 (50%)
 Frame = +1

Query: 478 SVTGSGKLHYASRTDWHTIPQWTPCAPTLL 567
           S T   K+ YA+  DW  +  +  C  TLL
Sbjct: 294 SRTDLPKVRYATALDWFLLMSFGYCIATLL 323


>DQ244075-1|ABB36785.1|  548|Apis mellifera cytochrome P450
           monooxygenase protein.
          Length = 548

 Score = 23.4 bits (48), Expect = 1.9
 Identities = 10/24 (41%), Positives = 16/24 (66%)
 Frame = +2

Query: 41  RTIKIGIYLVESEFKVQCEIILHR 112
           R  ++   + ESEF++Q +IIL R
Sbjct: 507 RNFRVRSDVKESEFRLQADIILKR 530


>AY273778-1|AAP33487.1|  427|Apis mellifera ultraspiracle protein
           protein.
          Length = 427

 Score = 21.4 bits (43), Expect = 7.5
 Identities = 8/10 (80%), Positives = 8/10 (80%)
 Frame = -3

Query: 412 PSGPRSQGSF 383
           PSGP S GSF
Sbjct: 65  PSGPNSPGSF 74


>AF263459-1|AAF73057.1|  427|Apis mellifera ultraspiracle protein
           protein.
          Length = 427

 Score = 21.4 bits (43), Expect = 7.5
 Identities = 8/10 (80%), Positives = 8/10 (80%)
 Frame = -3

Query: 412 PSGPRSQGSF 383
           PSGP S GSF
Sbjct: 65  PSGPNSPGSF 74


>AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 593

 Score = 21.0 bits (42), Expect = 9.9
 Identities = 4/5 (80%), Positives = 5/5 (100%)
 Frame = +2

Query: 266 CCWWR 280
           CCWW+
Sbjct: 488 CCWWK 492


>AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 646

 Score = 21.0 bits (42), Expect = 9.9
 Identities = 4/5 (80%), Positives = 5/5 (100%)
 Frame = +2

Query: 266 CCWWR 280
           CCWW+
Sbjct: 541 CCWWK 545


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 157,233
Number of Sequences: 438
Number of extensions: 3056
Number of successful extensions: 6
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 18949215
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)