Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1401
         (633 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g51480.1 68418.m06385 multi-copper oxidase type I family prot...    37   0.010
At4g25240.1 68417.m03632 multi-copper oxidase type I family prot...    32   0.36 
At2g47450.1 68415.m05922 chloroplast signal recognition particle...    29   3.4  
At1g34355.1 68414.m04265 forkhead-associated domain-containing p...    28   5.9  

>At5g51480.1 68418.m06385 multi-copper oxidase type I family protein
           contains Pfam profile: PF00394 Multicopper oxidase;
           similar to pollen-specific protein
          Length = 592

 Score = 37.1 bits (82), Expect = 0.010
 Identities = 19/57 (33%), Positives = 31/57 (54%)
 Frame = +1

Query: 343 TKLNFTDYSVKVNKNYPETSDQRDNRLNYEQALASVARLNYELEQSVTGSGKLHYAS 513
           +++NFTD+ V V ++Y        N  +    +AS   +N  + Q VTG G LHY++
Sbjct: 256 SQMNFTDFDVHVGQSYSFLVTMDQNATSDYYIVASARFVNETVWQRVTGVGILHYSN 312


>At4g25240.1 68417.m03632 multi-copper oxidase type I family protein
           pollen-specific protein precursor -Nicotiana tabacum,
           PID:g19902; contains Pfam profile: PF00394 Multicopper
           oxidase
          Length = 589

 Score = 31.9 bits (69), Expect = 0.36
 Identities = 22/59 (37%), Positives = 33/59 (55%), Gaps = 2/59 (3%)
 Frame = +1

Query: 343 TKLNFTDYSVKVNKNYP--ETSDQRDNRLNYEQALASVARLNYELEQSVTGSGKLHYAS 513
           ++ NFTD+ V V ++Y    T DQ D   +Y   +AS   +N  + Q VTG   LHY++
Sbjct: 257 SQANFTDFDVHVGQSYSFLVTMDQ-DATSDY-YIVASARFVNETVWQRVTGVAILHYSN 313


>At2g47450.1 68415.m05922 chloroplast signal recognition particle
           component (CAO) nearly identical to CAO [Arabidopsis
           thaliana] GI:4102582
          Length = 373

 Score = 28.7 bits (61), Expect = 3.4
 Identities = 15/59 (25%), Positives = 26/59 (44%), Gaps = 1/59 (1%)
 Frame = +1

Query: 376 VNKNYPETSDQRDNRLNYEQALASVARLNYELEQSVTGSGKLHYASR-TDWHTIPQWTP 549
           V +NY ET+   +     +++ +S   +N  +     G G + Y     D H+ P W P
Sbjct: 59  VQRNYEETTSSVEEAEEDDESSSSYGEVNKIIGSRTAGEGAMEYLIEWKDGHS-PSWVP 116


>At1g34355.1 68414.m04265 forkhead-associated domain-containing
            protein / FHA domain-containing protein
          Length = 1477

 Score = 27.9 bits (59), Expect = 5.9
 Identities = 17/51 (33%), Positives = 26/51 (50%), Gaps = 1/51 (1%)
 Frame = -2

Query: 356  KFSFVSVDMGRSRGAAHGGTAASRGV-STSSIADRHRPPRTTIIFSTSSLI 207
            K SF S     +   A      SRG+ S+S+++D     + TI+  TSSL+
Sbjct: 1197 KSSFQSQSYTEASSTASARNNISRGIRSSSNLSDAKSKMKWTIVLDTSSLL 1247


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,673,466
Number of Sequences: 28952
Number of extensions: 204680
Number of successful extensions: 530
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 517
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 530
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1295224128
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)