Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1400
         (744 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC965.06 |||potassium channel subunit |Schizosaccharomyces pom...    30   0.30 
SPCC191.11 |inv1||beta-fructofuranosidase|Schizosaccharomyces po...    27   2.8  
SPAC23H3.13c |gpa2|git8|heterotrimeric G protein alpha-2 subunit...    27   2.8  
SPAC4G9.08c |rpc2||DNA-directed RNA polymerase III complex subun...    27   3.7  
SPBC13E7.03c |||RNA hairpin binding protein |Schizosaccharomyces...    27   3.7  
SPBP35G2.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr...    26   6.5  
SPBC83.05 |||mitochondrial RNA-binding protein |Schizosaccharomy...    25   8.6  
SPBC28F2.03 |ppi1|cyp2|cyclophilin family peptidyl-prolyl cis-tr...    25   8.6  

>SPCC965.06 |||potassium channel subunit |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 344

 Score = 30.3 bits (65), Expect = 0.30
 Identities = 29/110 (26%), Positives = 50/110 (45%), Gaps = 14/110 (12%)
 Frame = +2

Query: 398 IYSPNSIGVISKSYNDYI--GSR----YAR*NGNF----GNIRRDHVPRDLEIEEQVALE 547
           ++SP   G+++  YND I  GSR    +    G      G  + D V +  +I EQ+   
Sbjct: 221 VWSPLKSGILTGKYNDGIPEGSRLSTTFTSLAGQLQTPEGKTQLDQVRQISKIAEQIGAT 280

Query: 548 PVQVA-PGVIFDP---ATALVISTPSGVSENIIEAAYNGTVAPDTVKSLN 685
           P Q+A    + +P    T L  S P  + EN+    +   + P+ +K ++
Sbjct: 281 PSQLALAWTLKNPYVSTTILGASKPEQIVENVKAVEFIDKLTPEILKKID 330


>SPCC191.11 |inv1||beta-fructofuranosidase|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 581

 Score = 27.1 bits (57), Expect = 2.8
 Identities = 11/37 (29%), Positives = 22/37 (59%), Gaps = 2/37 (5%)
 Frame = -2

Query: 194 PGITNIPVVGSKKLRCIASFKVHP--PLGNSMVFFLM 90
           PG+  +PV G+ + + +    ++P  PLG S+V + +
Sbjct: 282 PGMARVPVEGTDEYKWVLFISINPGAPLGGSVVQYFV 318


>SPAC23H3.13c |gpa2|git8|heterotrimeric G protein alpha-2 subunit
           Gpa2 |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 354

 Score = 27.1 bits (57), Expect = 2.8
 Identities = 15/33 (45%), Positives = 17/33 (51%)
 Frame = +2

Query: 371 TSNRK*IYCIYSPNSIGVISKSYNDYIGSRYAR 469
           T  RK IYC  + NSI +   S NDY    Y R
Sbjct: 204 TERRKWIYCFENVNSI-IFCVSLNDYDKKLYER 235


>SPAC4G9.08c |rpc2||DNA-directed RNA polymerase III complex subunit
           Rpc2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1165

 Score = 26.6 bits (56), Expect = 3.7
 Identities = 15/51 (29%), Positives = 26/51 (50%), Gaps = 3/51 (5%)
 Frame = +1

Query: 175 GMFVIPGTDRVLDLEEALKLN--LINPESQKSL-TPKLVKKCH*IKHSNYV 318
           G F++ GT++V+ ++E L  N  ++  E +K L    +    H  K   YV
Sbjct: 191 GYFIVKGTEKVILVQEQLSKNRIIVEAEPKKGLWQASVTSSTHERKSKTYV 241


>SPBC13E7.03c |||RNA hairpin binding protein |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 713

 Score = 26.6 bits (56), Expect = 3.7
 Identities = 11/32 (34%), Positives = 20/32 (62%)
 Frame = +1

Query: 28  QEIRTVTSKSVVTEPSVTSMTIKKNTIELPRG 123
           QEI T+ S S+ + PS + +++ K+    P+G
Sbjct: 138 QEISTLLSSSLTSSPSNSGLSLDKSLPSSPKG 169


>SPBP35G2.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 1060

 Score = 25.8 bits (54), Expect = 6.5
 Identities = 18/65 (27%), Positives = 30/65 (46%), Gaps = 1/65 (1%)
 Frame = -1

Query: 663 GATVPL*AASIIFSETPEGVDMTKAVAGSNITPGATCTGSKATCSSISRSR-GTWSRLIF 487
           G +VP    ++ F+E P G+    +   S+IT       + +  SS +R R  + S    
Sbjct: 95  GLSVPENQEAMNFNEGPTGISSIASKNNSSITSKLQNNSNLSVTSSANRGRTSSVSSSYD 154

Query: 486 PKFPF 472
           P FP+
Sbjct: 155 PSFPW 159


>SPBC83.05 |||mitochondrial RNA-binding protein |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 773

 Score = 25.4 bits (53), Expect = 8.6
 Identities = 16/64 (25%), Positives = 34/64 (53%)
 Frame = +3

Query: 318 LIDHVGRYKYITETITMLQAIESKYIVFIHLTQSVSSQKVITITSVAGMPDKMEISEISD 497
           LI ++ +++YI   + ML  +   +   +   +++   ++ITIT+V   PDK+   +   
Sbjct: 628 LITYLSQHEYIPYHMLMLDPLFKGHDDAV---RALEESELITITTVNARPDKVYAGKPVY 684

Query: 498 VTTY 509
           VT +
Sbjct: 685 VTAF 688


>SPBC28F2.03 |ppi1|cyp2|cyclophilin family peptidyl-prolyl cis-trans
           isomerase Cyp2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 162

 Score = 25.4 bits (53), Expect = 8.6
 Identities = 13/43 (30%), Positives = 20/43 (46%), Gaps = 1/43 (2%)
 Frame = -1

Query: 681 NDFTVSGATVP-L*AASIIFSETPEGVDMTKAVAGSNITPGAT 556
           + F ++    P L    ++F E  EG+D+ K V       GAT
Sbjct: 108 SQFFITTVVTPWLDGKHVVFGEVTEGMDVVKKVESLGSNSGAT 150


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,700,964
Number of Sequences: 5004
Number of extensions: 53826
Number of successful extensions: 159
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 151
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 159
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 353266144
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)