Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1400
         (744 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_01_0084 - 912255-912368,912738-912822,914050-917105,920290-92...    29   3.9  
12_02_1128 - 26341118-26341204,26341302-26341441,26341567-263416...    28   6.8  
08_01_0344 + 3043824-3044123,3044260-3044314,3044810-3044985,304...    28   6.8  
07_03_1452 - 26629219-26629428,26630113-26630280,26630363-266304...    28   6.8  

>04_01_0084 -
           912255-912368,912738-912822,914050-917105,920290-920508
          Length = 1157

 Score = 29.1 bits (62), Expect = 3.9
 Identities = 16/63 (25%), Positives = 30/63 (47%)
 Frame = +1

Query: 103 TIELPRGGWTLNEAIHLNFFDPTTGMFVIPGTDRVLDLEEALKLNLINPESQKSLTPKLV 282
           T ++  G W +   +H+        MF  P  D+ L  EEA ++       +  ++P++V
Sbjct: 218 TSQVRFGPWMITGDVHMVAGPSDVAMFADPMDDQPLLHEEAEEVARSTGVPKPGMSPEIV 277

Query: 283 KKC 291
           K+C
Sbjct: 278 KEC 280


>12_02_1128 -
           26341118-26341204,26341302-26341441,26341567-26341663,
           26341755-26341830,26341919-26342118,26342199-26342297,
           26342395-26342479,26342786-26343024,26343233-26343403,
           26343605-26343848,26343980-26344253,26344755-26344934,
           26345342-26345423,26346209-26346278,26346802-26346901,
           26347003-26347097,26347181-26347317,26347342-26347420,
           26347591-26347651,26348580-26349009
          Length = 981

 Score = 28.3 bits (60), Expect = 6.8
 Identities = 14/33 (42%), Positives = 23/33 (69%)
 Frame = +3

Query: 312 LRLIDHVGRYKYITETITMLQAIESKYIVFIHL 410
           L L D+V R ++  ETIT+L A++ +Y + +HL
Sbjct: 726 LFLGDYVDRGQHSLETITLLLALKVEYPLNVHL 758


>08_01_0344 +
           3043824-3044123,3044260-3044314,3044810-3044985,
           3045083-3045283,3045383-3045642,3045909-3046222,
           3046399-3046622,3047046-3047398,3047709-3047826,
           3047875-3048133,3048252-3049729
          Length = 1245

 Score = 28.3 bits (60), Expect = 6.8
 Identities = 16/44 (36%), Positives = 27/44 (61%), Gaps = 1/44 (2%)
 Frame = +1

Query: 157 FFDPTTGMFVIPG-TDRVLDLEEALKLNLINPESQKSLTPKLVK 285
           F+DPT+G  +I G + + LDL E+L+ N+ +   + SL    +K
Sbjct: 430 FYDPTSGSILIDGHSIKKLDL-ESLRRNIASVSQEPSLFSGTIK 472


>07_03_1452 -
           26629219-26629428,26630113-26630280,26630363-26630425,
           26630499-26630606,26630820-26630932,26631026-26631322,
           26631424-26631502,26631733-26631841,26631927-26631968,
           26632467-26632597,26633482-26633623,26633713-26633828,
           26634121-26634657
          Length = 704

 Score = 28.3 bits (60), Expect = 6.8
 Identities = 20/59 (33%), Positives = 27/59 (45%), Gaps = 1/59 (1%)
 Frame = -1

Query: 624 SETPEGVDMTKAVAGSNITPGATCTGSKATCSSISRSR-GTWSRLIFPKFPFYLAYRLP 451
           S+ PE      A A      GA   G  A  ++ + ++ GT  +   PKFPFYL   LP
Sbjct: 9   SQIPEPEAEEAAAAAGVAVAGAASPGPAAAAAAAAAAKPGTPKQ---PKFPFYLPSPLP 64


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,212,866
Number of Sequences: 37544
Number of extensions: 298743
Number of successful extensions: 773
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 757
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 773
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1968901276
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)