Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1400
         (744 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g76010.1 68414.m08825 expressed protein                             29   2.5  
At4g30770.1 68417.m04360 hypothetical protein                          28   5.7  
At5g45140.1 68418.m05542 DNA-directed RNA polymerase, putative s...    28   7.5  
At5g40480.1 68418.m04909 expressed protein ; expression supporte...    28   7.5  
At5g09760.1 68418.m01130 pectinesterase family protein contains ...    27   9.9  
At1g12220.1 68414.m01414 disease resistance protein RPS5 (CC-NBS...    27   9.9  

>At1g76010.1 68414.m08825 expressed protein
          Length = 350

 Score = 29.5 bits (63), Expect = 2.5
 Identities = 23/84 (27%), Positives = 42/84 (50%), Gaps = 2/84 (2%)
 Frame = +3

Query: 258 KVIDPKTRKEMPLDKALELRLIDHVGRYKYITETITMLQAIESKYIVFIHLTQSVSSQKV 437
           +V+ PK   + P+D A E+R+        YIT  +T+LQ   S  +VF  + ++++    
Sbjct: 6   RVVKPKA--DTPID-ANEIRITSQGRARNYITYAMTLLQDKGSTEVVFKAMGRAINKTVT 62

Query: 438 ITITSVAGMPDKMEISEI--SDVT 503
           I       +PD  + + I  +D+T
Sbjct: 63  IVELIKRRIPDLHQNTSIGSTDIT 86


>At4g30770.1 68417.m04360 hypothetical protein 
          Length = 157

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 17/62 (27%), Positives = 27/62 (43%)
 Frame = +2

Query: 476 GNFGNIRRDHVPRDLEIEEQVALEPVQVAPGVIFDPATALVISTPSGVSENIIEAAYNGT 655
           GN  N   + + RDL+  EQ    P    P  I  P   +++S     S+  +  + N T
Sbjct: 82  GNNNNANGETMTRDLDPPEQSLESPDDDDPEPIAHPQGQVLVSIEGNQSKKRMSTSSNST 141

Query: 656 VA 661
           +A
Sbjct: 142 IA 143


>At5g45140.1 68418.m05542 DNA-directed RNA polymerase, putative
           similar to SP|P22276 DNA-directed RNA polymerase III 130
           kDa polypeptide (EC 2.7.7.6) (RNA polymerase III subunit
           2) {Saccharomyces cerevisiae}; contains Pfam profiles
           PF04560: RNA polymerase Rpb2 domain 7, PF04561: RNA
           polymerase Rpb2 domain 2, PF04565: RNA polymerase Rpb2
           domain 3, PF04566: RNA polymerase Rpb2 domain 4,
           PF04567: RNA polymerase Rpb2 domain 5
          Length = 1150

 Score = 27.9 bits (59), Expect = 7.5
 Identities = 13/29 (44%), Positives = 19/29 (65%)
 Frame = +1

Query: 175 GMFVIPGTDRVLDLEEALKLNLINPESQK 261
           G F+I GT++VL ++E L  N I  +S K
Sbjct: 176 GYFIIKGTEKVLLIQEQLSKNRIIIDSDK 204


>At5g40480.1 68418.m04909 expressed protein ; expression supported by
            MPSS
          Length = 1919

 Score = 27.9 bits (59), Expect = 7.5
 Identities = 19/84 (22%), Positives = 37/84 (44%), Gaps = 4/84 (4%)
 Frame = +1

Query: 1    VSQPRESVVQEIRTVTSKSVVTEPSVTSMTIKKNTIELPRGGWTLNEAIHLNFFDPTT-- 174
            V +   SV + + T + K       +T++ +         GG  L++ I +  + P    
Sbjct: 1092 VDEDSLSVGEHVATSSFKIAARRLGITTLYVSARQ---QSGGKVLSQTIKVEVYSPPRLH 1148

Query: 175  --GMFVIPGTDRVLDLEEALKLNL 240
              G+F++PG   VL +E    +N+
Sbjct: 1149 PQGIFLVPGASYVLTIEGGPTMNV 1172


>At5g09760.1 68418.m01130 pectinesterase family protein contains
           Pfam profile: PF01095 pectinesterase
          Length = 551

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 10/26 (38%), Positives = 17/26 (65%)
 Frame = +2

Query: 554 QVAPGVIFDPATALVISTPSGVSENI 631
           +  PG+  DP+T L +  PSG+ E++
Sbjct: 216 KTGPGLGLDPSTGLNLGFPSGLKEDV 241


>At1g12220.1 68414.m01414 disease resistance protein RPS5
           (CC-NBS-LRR class) / resistance to Pseudomonas syringae
           protein 5 (CC-NBS-LRR class) domain signature CC-NBS-LRR
           exists, suggestive of a disease resistance protein.
           Identical to RPS5 (resistance to Pseudomonas syringae
           protein 5)(gi:3309620)
          Length = 889

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 29/103 (28%), Positives = 51/103 (49%), Gaps = 5/103 (4%)
 Frame = +1

Query: 109 ELPRGGWTLNEAIHLNFFDPTTGMFVIPGTDRVLDLEEALKLNLINPESQKSLTPKLVKK 288
           +LP G WTL + IHLN  +  + +  I G   + +L   L L     +S+  L   LVK+
Sbjct: 601 QLPVGLWTLKKLIHLN-LEHMSSLGSILGISNLWNL-RTLGLR----DSRLLLDMSLVKE 654

Query: 289 CH*IKHSNYV*L-----IMSVVINISLKLLQCYKQ*KVNILYL 402
              ++H   + L     +++  +  S +L++C K+  V+  YL
Sbjct: 655 LQLLEHLEVITLDISSSLVAEPLLCSQRLVECIKE--VDFKYL 695


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,643,368
Number of Sequences: 28952
Number of extensions: 263156
Number of successful extensions: 709
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 696
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 709
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1643603136
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)