Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1398
         (457 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC63.04 |mok14||alpha-1,3-glucan synthase Mok14|Schizosaccharo...    29   0.26 
SPBC31E1.02c |pmr1||P-type ATPase, calcium transporting Pmr1 |Sc...    27   1.0  
SPBC725.10 |||tspO homolog|Schizosaccharomyces pombe|chr 2|||Manual    27   1.4  
SPAC3H8.07c |||prefoldin subunit 3|Schizosaccharomyces pombe|chr...    27   1.8  
SPBC4B4.01c |||fumble family pantothenate kinase |Schizosaccharo...    27   1.8  
SPAC9G1.11c |spn4||septin Spn4|Schizosaccharomyces pombe|chr 1||...    26   2.4  
SPAC4D7.02c |||glycerophosphoryl diester phosphodiesterase |Schi...    25   4.2  
SPCC553.06 |||oligosaccharyltransferase subunit|Schizosaccharomy...    25   7.3  
SPAC22F3.04 |mug62||AMP binding enzyme |Schizosaccharomyces pomb...    24   9.6  

>SPCC63.04 |mok14||alpha-1,3-glucan synthase Mok14|Schizosaccharomyces
            pombe|chr 3|||Manual
          Length = 1369

 Score = 29.5 bits (63), Expect = 0.26
 Identities = 17/61 (27%), Positives = 28/61 (45%)
 Frame = +3

Query: 252  TGFHARALPSERDRGMQRSNIDSRGVALLQFPFSHLSHSPVYKYCADLTLNLYLFYLYIK 431
            TGF  R     + +  +  ++D     + Q P +  +  P YK  A   LN+Y   LY+K
Sbjct: 881  TGFRKRVYKYLKIKDKKSKDVDPDDDLVNQLPLNAYT-KPRYKSAASTRLNIYQRILYLK 939

Query: 432  I 434
            +
Sbjct: 940  V 940


>SPBC31E1.02c |pmr1||P-type ATPase, calcium transporting Pmr1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 899

 Score = 27.5 bits (58), Expect = 1.0
 Identities = 15/59 (25%), Positives = 29/59 (49%)
 Frame = +2

Query: 242 CVWNGLPRARLALREGQRDAEIEHRQPWSRITTISFLSFVSFASIQILC*FNSKSISIL 418
           C W G P     +   +R    + R+ +SRI+ +SF S   + S+ +   +NS  ++ +
Sbjct: 398 CPWAGFPVDVALIECSERFGLKDPRETYSRISEVSFSSERKYMSVAVQ--YNSSKMNFM 454


>SPBC725.10 |||tspO homolog|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 162

 Score = 27.1 bits (57), Expect = 1.4
 Identities = 15/47 (31%), Positives = 24/47 (51%)
 Frame = -1

Query: 331 ATPRLSMFDLCIPLSLSEGKARAWKPVPDTAIHY*TPCHAFMTMSSY 191
           A P+L++ DL I   L    A+ W P+  TA  +  P  A++  + Y
Sbjct: 109 AKPKLALADLGILTGLVGWLAKTWWPLAPTASKWLIPYLAWLGYAGY 155


>SPAC3H8.07c |||prefoldin subunit 3|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 169

 Score = 26.6 bits (56), Expect = 1.8
 Identities = 11/25 (44%), Positives = 17/25 (68%)
 Frame = +1

Query: 94  RAQ*NASSVNTIKVYNCSIVLSQRT 168
           RAQ     VNT +VYN +++L ++T
Sbjct: 143 RAQVTTMEVNTARVYNYTVLLRKKT 167


>SPBC4B4.01c |||fumble family pantothenate kinase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 403

 Score = 26.6 bits (56), Expect = 1.8
 Identities = 26/79 (32%), Positives = 34/79 (43%), Gaps = 1/79 (1%)
 Frame = +2

Query: 191 IRRHRHKSVARCLVVYRCVWNGLPRARLALREGQRDAEIEHRQPWSRITTISFLSFVSFA 370
           I R    +V R L     VW  L  AR+   EGQ D +I      S +T I+     S A
Sbjct: 12  ISRETISNVERQLSQPPSVWLNLTGARIIENEGQFDKDIALPNNKSHVTHIAVDIGGSLA 71

Query: 371 SIQ-ILC*FNSKSISILSI 424
            +   +C  +S S S  SI
Sbjct: 72  KVMYYVCESSSPSSSSSSI 90


>SPAC9G1.11c |spn4||septin Spn4|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 380

 Score = 26.2 bits (55), Expect = 2.4
 Identities = 9/27 (33%), Positives = 18/27 (66%)
 Frame = -2

Query: 393 NQHNICILANETNERKEIVVMRLHGCL 313
           +QH   +  ++  +R++I+ MR+H CL
Sbjct: 116 DQHESYMRQDQQPDRRKIIDMRIHACL 142


>SPAC4D7.02c |||glycerophosphoryl diester phosphodiesterase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 319

 Score = 25.4 bits (53), Expect = 4.2
 Identities = 11/23 (47%), Positives = 16/23 (69%)
 Frame = +3

Query: 153 VVSEDVIGARILS*EDIVIKAWH 221
           ++S+D + AR LS   IV K+WH
Sbjct: 268 LLSDDPVMARALSQGPIVTKSWH 290


>SPCC553.06 |||oligosaccharyltransferase subunit|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 271

 Score = 24.6 bits (51), Expect = 7.3
 Identities = 18/58 (31%), Positives = 26/58 (44%), Gaps = 3/58 (5%)
 Frame = +3

Query: 243 VSGTGFHARALPSE---RDRGMQRSNIDSRGVALLQFPFSHLSHSPVYKYCADLTLNL 407
           ++G    ARAL +     +  +Q S+ D          FS +  S VY+   D TLNL
Sbjct: 7   IAGFLLFARALCASWNVEEGTLQLSSQDLESENAYDLKFSQIQSSTVYELTGDETLNL 64


>SPAC22F3.04 |mug62||AMP binding enzyme |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1428

 Score = 24.2 bits (50), Expect = 9.6
 Identities = 9/17 (52%), Positives = 12/17 (70%)
 Frame = -3

Query: 329 DSTAVYVRSLHPSVPLG 279
           DS  V + + HPS+PLG
Sbjct: 304 DSKDVLITNFHPSMPLG 320


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,779,428
Number of Sequences: 5004
Number of extensions: 34473
Number of successful extensions: 65
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 65
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 65
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 170285640
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)