Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1398
         (457 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

10_01_0102 - 1244294-1245478                                           30   0.77 
03_02_0304 - 7273008-7273257,7273367-7273524,7273668-7273734,727...    28   4.1  
01_02_0003 + 10077414-10077653                                         28   4.1  
12_02_0604 + 20920609-20922144                                         27   5.4  
06_01_0351 + 2537022-2538281                                           27   7.2  
04_03_0521 + 16765347-16767324,16769202-16769392                       27   7.2  

>10_01_0102 - 1244294-1245478
          Length = 394

 Score = 30.3 bits (65), Expect = 0.77
 Identities = 14/35 (40%), Positives = 19/35 (54%)
 Frame = +2

Query: 242 CVWNGLPRARLALREGQRDAEIEHRQPWSRITTIS 346
           C W G+  +R  +R G+R     HR PW  +T IS
Sbjct: 27  CNWTGIMCSRSVIRHGRR-----HRLPWPVVTNIS 56


>03_02_0304 -
           7273008-7273257,7273367-7273524,7273668-7273734,
           7274461-7274645,7274801-7275215,7275311-7275418,
           7275557-7275792,7275888-7275914
          Length = 481

 Score = 27.9 bits (59), Expect = 4.1
 Identities = 13/38 (34%), Positives = 21/38 (55%)
 Frame = +3

Query: 270 ALPSERDRGMQRSNIDSRGVALLQFPFSHLSHSPVYKY 383
           +LP  + R + RS ++S G A   +    ++ SP YKY
Sbjct: 337 SLPEAKTRLLLRSEVESEGGAFHGWNEGAIAFSPTYKY 374


>01_02_0003 + 10077414-10077653
          Length = 79

 Score = 27.9 bits (59), Expect = 4.1
 Identities = 13/30 (43%), Positives = 19/30 (63%)
 Frame = +2

Query: 29  RPTYSACQSAVLRKKTVISLRSVHSKMHHP 118
           RP  S+  +AVLR++ ++ LR  H   HHP
Sbjct: 42  RPARSS-SAAVLRREHLLPLRPEHRHRHHP 70


>12_02_0604 + 20920609-20922144
          Length = 511

 Score = 27.5 bits (58), Expect = 5.4
 Identities = 11/24 (45%), Positives = 16/24 (66%)
 Frame = +3

Query: 237 IAVSGTGFHARALPSERDRGMQRS 308
           I V+G GFHA A+  E+  G Q++
Sbjct: 27  IVVNGNGFHAEAMEVEKQGGDQKA 50


>06_01_0351 + 2537022-2538281
          Length = 419

 Score = 27.1 bits (57), Expect = 7.2
 Identities = 15/44 (34%), Positives = 20/44 (45%)
 Frame = -2

Query: 255 PFQTQRYTTKHRATLL*RCLLMIRSWLQ*RPLRQHD*TIVNFNR 124
           P  T+RY T+         LLM+R W+   P+   D  IV   R
Sbjct: 270 PCSTERYATERYLVASNDRLLMVRRWINLPPIYPSDSGIVKRTR 313


>04_03_0521 + 16765347-16767324,16769202-16769392
          Length = 722

 Score = 27.1 bits (57), Expect = 7.2
 Identities = 15/45 (33%), Positives = 21/45 (46%)
 Frame = +2

Query: 137 TIVQSCCLRGRYWSQDLIIRRHRHKSVARCLVVYRCVWNGLPRAR 271
           T+V   C  GR      + R   HK V    V+Y  + +GL +AR
Sbjct: 441 TLVDGYCKNGRIDDALTVFRDMLHKGVKPTSVLYSIILHGLFQAR 485


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,189,851
Number of Sequences: 37544
Number of extensions: 220972
Number of successful extensions: 600
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 591
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 599
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 895500300
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)