Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1398
         (457 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_54054| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   5.6  
SB_48885| Best HMM Match : DUF741 (HMM E-Value=0.88)                   27   7.4  
SB_11657| Best HMM Match : bZIP_2 (HMM E-Value=3e-16)                  27   7.4  
SB_21196| Best HMM Match : I-set (HMM E-Value=1.3)                     27   9.7  

>SB_54054| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 4232

 Score = 27.5 bits (58), Expect = 5.6
 Identities = 15/32 (46%), Positives = 20/32 (62%)
 Frame = +1

Query: 112  SSVNTIKVYNCSIVLSQRTLLEPGSYHKKTSS 207
            ++VNT    N S+V+ Q T+  PGSY   TSS
Sbjct: 1892 NTVNTTASTNTSVVV-QITVTHPGSYGNTTSS 1922


>SB_48885| Best HMM Match : DUF741 (HMM E-Value=0.88)
          Length = 841

 Score = 27.1 bits (57), Expect = 7.4
 Identities = 10/23 (43%), Positives = 13/23 (56%)
 Frame = +3

Query: 375 YKYCADLTLNLYLFYLYIKINCC 443
           Y  C DLTL  Y   + +K +CC
Sbjct: 248 YDCCKDLTLRKYKMTVEVKYDCC 270


>SB_11657| Best HMM Match : bZIP_2 (HMM E-Value=3e-16)
          Length = 298

 Score = 27.1 bits (57), Expect = 7.4
 Identities = 16/51 (31%), Positives = 23/51 (45%)
 Frame = -1

Query: 289 SLSEGKARAWKPVPDTAIHY*TPCHAFMTMSSYDKILAPITSSETTRLNNC 137
           SLS+   +   P+  T  ++   CH    + S  K  APIT+  T    NC
Sbjct: 232 SLSDRSRKRPAPITTTITNHRLNCHTNSVILSSRKRPAPITTMITNHRLNC 282


>SB_21196| Best HMM Match : I-set (HMM E-Value=1.3)
          Length = 250

 Score = 26.6 bits (56), Expect = 9.7
 Identities = 15/40 (37%), Positives = 21/40 (52%)
 Frame = +3

Query: 246 SGTGFHARALPSERDRGMQRSNIDSRGVALLQFPFSHLSH 365
           +G+  H R L + RD  ++    +  G  L QFP  HLSH
Sbjct: 165 NGSSRHFRTL-AYRDLTLECIVSNKHGSDLYQFPVKHLSH 203


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,448,239
Number of Sequences: 59808
Number of extensions: 275108
Number of successful extensions: 631
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 545
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 631
length of database: 16,821,457
effective HSP length: 76
effective length of database: 12,276,049
effective search space used: 920703675
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)