Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1398
         (457 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF106575-5|AAC78171.1|  421|Caenorhabditis elegans Hypothetical ...    30   0.69 
Z81493-3|CAB04036.1|  132|Caenorhabditis elegans Hypothetical pr...    27   6.5  
Z81042-1|CAB02795.1| 1657|Caenorhabditis elegans Hypothetical pr...    27   8.6  

>AF106575-5|AAC78171.1|  421|Caenorhabditis elegans Hypothetical
           protein K04F1.12 protein.
          Length = 421

 Score = 30.3 bits (65), Expect = 0.69
 Identities = 17/47 (36%), Positives = 25/47 (53%), Gaps = 2/47 (4%)
 Frame = -2

Query: 417 RIDIDLELNQHNICILANETN--ERKEIVVMRLHGCLCSISASLCPS 283
           RID+D+E N  N CI   E +  +  + +V  L+G    IS   CP+
Sbjct: 210 RIDVDIENNSENFCITIQEMSNLQSNKDIVFGLNG----ISGKYCPA 252


>Z81493-3|CAB04036.1|  132|Caenorhabditis elegans Hypothetical
           protein F01D5.3 protein.
          Length = 132

 Score = 27.1 bits (57), Expect = 6.5
 Identities = 17/43 (39%), Positives = 19/43 (44%)
 Frame = +1

Query: 232 SVSLCLERASTRAPCPPRGTEGCRDRT*TAVESHYYNFLSLIC 360
           SVSL   + ST APC       CRD         Y NFL + C
Sbjct: 11  SVSLAACQIST-APCQDDPYTDCRDYAALCNNPMYKNFLDVFC 52


>Z81042-1|CAB02795.1| 1657|Caenorhabditis elegans Hypothetical protein
            C27H6.1 protein.
          Length = 1657

 Score = 26.6 bits (56), Expect = 8.6
 Identities = 11/27 (40%), Positives = 16/27 (59%)
 Frame = +3

Query: 69   KKQSLVFEACTVKCIIRKHD*SLQLFN 149
            KK+S + E C   C +R H  +L L+N
Sbjct: 1110 KKKSFMAERCWKPCYVRLHGLTLYLYN 1136


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,925,212
Number of Sequences: 27780
Number of extensions: 199065
Number of successful extensions: 500
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 498
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 500
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 809909048
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)