Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1396
         (640 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q41GS3 Cluster: Helix-turn-helix, AraC type; n=1; Exigu...    36   1.1  
UniRef50_Q4W4D2 Cluster: Putative uncharacterized protein; n=1; ...    33   5.8  

>UniRef50_Q41GS3 Cluster: Helix-turn-helix, AraC type; n=1;
           Exiguobacterium sibiricum 255-15|Rep: Helix-turn-helix,
           AraC type - Exiguobacterium sibiricum 255-15
          Length = 384

 Score = 35.5 bits (78), Expect = 1.1
 Identities = 20/66 (30%), Positives = 35/66 (53%)
 Frame = -1

Query: 451 SVTYMTNKHLRLTKIFLIIVRYLKALNNSPTVLLPFPVIQKHFLTHTLPVIIVRNEISFK 272
           S++ + N+H+R+T  F   V+ ++ L +SP VL     IQ+H L   L V  +   I   
Sbjct: 252 SISELRNRHVRITVSFAEAVKQIQELRHSPHVLAAIRYIQQH-LYDPLSVSSISQAIHVS 310

Query: 271 TIYTNI 254
           + Y ++
Sbjct: 311 SNYLSV 316


>UniRef50_Q4W4D2 Cluster: Putative uncharacterized protein; n=1;
           Antheraea mylitta|Rep: Putative uncharacterized protein
           - Antheraea mylitta (Tasar silkworm)
          Length = 46

 Score = 33.1 bits (72), Expect = 5.8
 Identities = 16/31 (51%), Positives = 19/31 (61%)
 Frame = +2

Query: 161 INELSNTERIFQIGPVAPEISAFKRTNSSAL 253
           +NEL NTE    IGPV  EI+ +  TNS  L
Sbjct: 1   MNELYNTEIFNHIGPVVSEITPYNVTNSQTL 31


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 585,483,089
Number of Sequences: 1657284
Number of extensions: 10938639
Number of successful extensions: 23379
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 22541
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 23345
length of database: 575,637,011
effective HSP length: 97
effective length of database: 414,880,463
effective search space used: 47711253245
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)