Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1396
         (640 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC607.09c |btn1||battenin CLN3 family protein|Schizosaccharomy...    31   0.11 
SPCC330.08 |alg11|gmd3|alpha-1,2-mannosyltransferase Alg11|Schiz...    26   4.0  
SPAC15A10.03c |rhp54|rad54|Rad54 homolog Rhp54|Schizosaccharomyc...    26   4.0  
SPAC22E12.16c |pik1||phosphatidylinositol kinase Pik1|Schizosacc...    25   7.0  
SPBC6B1.04 |mde4||monopolin-like complex subunit Mde4|Schizosacc...    25   9.2  

>SPAC607.09c |btn1||battenin CLN3 family protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 396

 Score = 31.5 bits (68), Expect = 0.11
 Identities = 22/82 (26%), Positives = 37/82 (45%), Gaps = 4/82 (4%)
 Frame = -1

Query: 487 GFVFF*DYYCSVSVTYMTNKHLRLTKIFLIIVRYLKALNNSPTVLLPFPVIQKH-FLT-- 317
           GF  F D+Y +    Y     L  + I    V YL+ L  +  ++L F ++Q   +LT  
Sbjct: 259 GFSSFRDFYPTYQTVYQIGVFLSRSSISFFTVPYLRTLAITQFIILLFTILQSALYLTSS 318

Query: 316 -HTLPVIIVRNEISFKTIYTNI 254
            H +  +I    +   T+Y N+
Sbjct: 319 YHFVLFLIFVEGLIGGTVYVNV 340


>SPCC330.08 |alg11|gmd3|alpha-1,2-mannosyltransferase
           Alg11|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 471

 Score = 26.2 bits (55), Expect = 4.0
 Identities = 10/32 (31%), Positives = 17/32 (53%)
 Frame = -1

Query: 460 CSVSVTYMTNKHLRLTKIFLIIVRYLKALNNS 365
           CS+ V YM N+H  +  +  +    +  +NNS
Sbjct: 361 CSIGVNYMWNEHFGIGVVEYMAAGLIPVVNNS 392


>SPAC15A10.03c |rhp54|rad54|Rad54 homolog Rhp54|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 852

 Score = 26.2 bits (55), Expect = 4.0
 Identities = 18/41 (43%), Positives = 20/41 (48%), Gaps = 1/41 (2%)
 Frame = +1

Query: 424 SVCSSCT*QKQNSSNLKKIRN-RKSLSDLCKRQG*VPPPSP 543
           +V S  T Q   +SN  K R   KSL DL   Q   PPP P
Sbjct: 211 TVASCSTEQSLITSNTSKHRRPNKSLKDLLGIQKEKPPPPP 251


>SPAC22E12.16c |pik1||phosphatidylinositol kinase
           Pik1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 851

 Score = 25.4 bits (53), Expect = 7.0
 Identities = 13/40 (32%), Positives = 22/40 (55%), Gaps = 1/40 (2%)
 Frame = +3

Query: 309 KVWVKKC-F*ITGNGSNTVGELFNAFKYLTIIKNIFVNLK 425
           KVWV++    +TG+ S  +  + NA    +I KN+   L+
Sbjct: 612 KVWVRRMKILVTGDNSGLIETITNAISVHSIKKNLTKQLR 651


>SPBC6B1.04 |mde4||monopolin-like complex subunit
           Mde4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 421

 Score = 25.0 bits (52), Expect = 9.2
 Identities = 14/40 (35%), Positives = 19/40 (47%)
 Frame = -1

Query: 469 DYYCSVSVTYMTNKHLRLTKIFLIIVRYLKALNNSPTVLL 350
           D   S S T+  NK  + T++ LII    KAL      +L
Sbjct: 143 DTVSSPSKTHKANKDEKATRLHLIIANLKKALKEKDAEVL 182


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,537,696
Number of Sequences: 5004
Number of extensions: 49388
Number of successful extensions: 115
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 113
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 115
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 285732116
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)