Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1396
         (640 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_01_0457 - 3263519-3263749,3264565-3265175,3265966-3266143           28   7.2  
04_01_0022 + 324422-324445,324870-325265,325366-325546,325781-32...    28   7.2  
01_06_1019 - 33875339-33875548                                         28   7.2  

>06_01_0457 - 3263519-3263749,3264565-3265175,3265966-3266143
          Length = 339

 Score = 27.9 bits (59), Expect = 7.2
 Identities = 16/36 (44%), Positives = 21/36 (58%), Gaps = 2/36 (5%)
 Frame = +2

Query: 116 CIGLTVIL--YSL*GSSINELSNTERIFQIGPVAPE 217
           CI LT+IL  YSL G    + S+  R+F+ G   PE
Sbjct: 63  CIMLTIILPTYSLTGDIHGQYSDLLRLFEYGGFPPE 98


>04_01_0022 +
           324422-324445,324870-325265,325366-325546,325781-326072,
           326389-326461,326610-326700,326815-326894,326992-327234
          Length = 459

 Score = 27.9 bits (59), Expect = 7.2
 Identities = 13/36 (36%), Positives = 19/36 (52%)
 Frame = -3

Query: 446 HVHDEQTLEINKNILNNRKVFKSIK*LSDCIAAIPS 339
           H++  Q+L +N   LNN K FK +  L      +PS
Sbjct: 145 HMYRSQSLPMNMKKLNNGKSFKRMNSLGGVYRVVPS 180


>01_06_1019 - 33875339-33875548
          Length = 69

 Score = 27.9 bits (59), Expect = 7.2
 Identities = 12/35 (34%), Positives = 21/35 (60%)
 Frame = -1

Query: 439 MTNKHLRLTKIFLIIVRYLKALNNSPTVLLPFPVI 335
           M+  HLR+  +FL++  YL A+  +P  +   PV+
Sbjct: 1   MSTGHLRVFAVFLVVQVYLLAMMAAPWTVQAGPVV 35


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,826,088
Number of Sequences: 37544
Number of extensions: 270378
Number of successful extensions: 621
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 588
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 618
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1573040476
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)