Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--1396
(640 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_9580| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.15
SB_52939| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 0.34
SB_245| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 0.34
SB_36588| Best HMM Match : HEAT (HMM E-Value=6.9) 30 1.8
SB_21830| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.8
SB_46227| Best HMM Match : DUF1303 (HMM E-Value=6.4) 29 3.2
SB_48458| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.2
SB_6457| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.2
SB_18434| Best HMM Match : DUF646 (HMM E-Value=4.8) 28 5.6
SB_8656| Best HMM Match : Chorion_3 (HMM E-Value=2.4) 28 5.6
SB_34832| Best HMM Match : SAP (HMM E-Value=1.4e-07) 28 7.4
SB_16078| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.7
SB_30673| Best HMM Match : efhand (HMM E-Value=0.00017) 27 9.7
>SB_9580| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 415
Score = 33.5 bits (73), Expect = 0.15
Identities = 14/28 (50%), Positives = 19/28 (67%)
Frame = +3
Query: 363 GELFNAFKYLTIIKNIFVNLKCLFVMYV 446
GE+ N FK+L KN+ VNL C+ MY+
Sbjct: 365 GEIINDFKFLDFKKNLKVNLSCVGKMYL 392
>SB_52939| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 141
Score = 32.3 bits (70), Expect = 0.34
Identities = 13/28 (46%), Positives = 19/28 (67%)
Frame = +3
Query: 363 GELFNAFKYLTIIKNIFVNLKCLFVMYV 446
GE+ N FK+L KN+ +NL C+ MY+
Sbjct: 81 GEIINDFKFLDFKKNLKLNLSCVGKMYL 108
>SB_245| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 142
Score = 32.3 bits (70), Expect = 0.34
Identities = 13/28 (46%), Positives = 19/28 (67%)
Frame = +3
Query: 363 GELFNAFKYLTIIKNIFVNLKCLFVMYV 446
GE+ N FK+L KN+ +NL C+ MY+
Sbjct: 82 GEIINDFKFLDFKKNLKLNLNCVGKMYL 109
>SB_36588| Best HMM Match : HEAT (HMM E-Value=6.9)
Length = 111
Score = 29.9 bits (64), Expect = 1.8
Identities = 12/28 (42%), Positives = 18/28 (64%)
Frame = +3
Query: 363 GELFNAFKYLTIIKNIFVNLKCLFVMYV 446
GE+ FK+L KN+ +NL C+ MY+
Sbjct: 77 GEIIKDFKFLDFKKNLKLNLSCVGKMYL 104
>SB_21830| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 280
Score = 29.9 bits (64), Expect = 1.8
Identities = 9/28 (32%), Positives = 17/28 (60%)
Frame = +2
Query: 497 YLISVNGKGRYHHHHPAFMLVMLFILXV 580
Y +S RYHHHH +++++ I+ +
Sbjct: 188 YSVSFQNSNRYHHHHHHHIIIIINIIII 215
>SB_46227| Best HMM Match : DUF1303 (HMM E-Value=6.4)
Length = 610
Score = 29.1 bits (62), Expect = 3.2
Identities = 14/56 (25%), Positives = 28/56 (50%)
Frame = +2
Query: 428 FVRHVRDRNRTVVILKKYETVSRYLISVNGKGRYHHHHPAFMLVMLFILXVGVDNE 595
++ V + N + K++E + Y+ V+ + Y HH +++ +I V DNE
Sbjct: 50 YIAMVSEENEYLHHPKEHEVMIPYIAMVSEENEYLHHPKEHEVMIPYIAMVSEDNE 105
Score = 29.1 bits (62), Expect = 3.2
Identities = 14/56 (25%), Positives = 28/56 (50%)
Frame = +2
Query: 428 FVRHVRDRNRTVVILKKYETVSRYLISVNGKGRYHHHHPAFMLVMLFILXVGVDNE 595
++ V + N + K++E + Y+ V+ + Y HH +++ +I V DNE
Sbjct: 119 YIAMVSEENEYLHHPKEHEVMIPYIAMVSEENEYLHHPKEHEVMIPYIAMVSEDNE 174
Score = 29.1 bits (62), Expect = 3.2
Identities = 14/56 (25%), Positives = 28/56 (50%)
Frame = +2
Query: 428 FVRHVRDRNRTVVILKKYETVSRYLISVNGKGRYHHHHPAFMLVMLFILXVGVDNE 595
++ V + N + K++E + Y+ V+ + Y HH +++ +I V DNE
Sbjct: 234 YIAMVSEENEYLHHPKEHEVMIPYIAMVSEENEYLHHPKEHEVMIPYIAMVSEDNE 289
Score = 29.1 bits (62), Expect = 3.2
Identities = 14/56 (25%), Positives = 28/56 (50%)
Frame = +2
Query: 428 FVRHVRDRNRTVVILKKYETVSRYLISVNGKGRYHHHHPAFMLVMLFILXVGVDNE 595
++ V + N + K++E + Y+ V+ + Y HH +++ +I V DNE
Sbjct: 406 YIAMVSEDNEYLHHPKEHEVMITYIAMVSEEDEYFHHPKEHEVMIPYIAMVSEDNE 461
Score = 28.7 bits (61), Expect = 4.2
Identities = 14/56 (25%), Positives = 28/56 (50%)
Frame = +2
Query: 428 FVRHVRDRNRTVVILKKYETVSRYLISVNGKGRYHHHHPAFMLVMLFILXVGVDNE 595
++ V + N + LK++E + Y+ V+ Y HH +++ +I V +NE
Sbjct: 498 YIAMVSEDNEYLHHLKEHEVMIPYIAMVSEDNEYLHHPKEHEVMIPYIAMVSEENE 553
Score = 28.3 bits (60), Expect = 5.6
Identities = 14/56 (25%), Positives = 28/56 (50%)
Frame = +2
Query: 428 FVRHVRDRNRTVVILKKYETVSRYLISVNGKGRYHHHHPAFMLVMLFILXVGVDNE 595
++ V + N + K++E + Y+ V+ + Y HH +++ +I V DNE
Sbjct: 280 YIAMVSEDNEYLHHPKEHEVMIPYIAMVSEENEYLHHPKEHEVMIPYIAMVSEDNE 335
Score = 27.5 bits (58), Expect = 9.7
Identities = 13/56 (23%), Positives = 28/56 (50%)
Frame = +2
Query: 428 FVRHVRDRNRTVVILKKYETVSRYLISVNGKGRYHHHHPAFMLVMLFILXVGVDNE 595
++ V + N + K++E + Y+ V+ + Y HH +++ +I V +NE
Sbjct: 27 YIAMVSEENEYLHNPKEHEVMIPYIAMVSEENEYLHHPKEHEVMIPYIAMVSEENE 82
Score = 27.5 bits (58), Expect = 9.7
Identities = 13/56 (23%), Positives = 28/56 (50%)
Frame = +2
Query: 428 FVRHVRDRNRTVVILKKYETVSRYLISVNGKGRYHHHHPAFMLVMLFILXVGVDNE 595
++ V + N + K++E + Y+ V+ + Y HH +++ +I V +NE
Sbjct: 188 YIAMVSEENEYLHHPKEHEVMIPYIAMVSEENEYLHHPKEHEVMIPYIAMVSEENE 243
Score = 27.5 bits (58), Expect = 9.7
Identities = 13/56 (23%), Positives = 28/56 (50%)
Frame = +2
Query: 428 FVRHVRDRNRTVVILKKYETVSRYLISVNGKGRYHHHHPAFMLVMLFILXVGVDNE 595
++ V + N + K++E + Y+ V+ + Y HH +++ +I V +NE
Sbjct: 211 YIAMVSEENEYLHHPKEHEVMIPYIAMVSEENEYLHHPKEHEVMIPYIAMVSEENE 266
>SB_48458| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 129
Score = 29.1 bits (62), Expect = 3.2
Identities = 11/23 (47%), Positives = 16/23 (69%)
Frame = +3
Query: 363 GELFNAFKYLTIIKNIFVNLKCL 431
GE+ N FK+L KN+ +NL C+
Sbjct: 69 GEIINDFKFLDFKKNLKLNLSCV 91
>SB_6457| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 137
Score = 29.1 bits (62), Expect = 3.2
Identities = 12/28 (42%), Positives = 18/28 (64%)
Frame = +3
Query: 363 GELFNAFKYLTIIKNIFVNLKCLFVMYV 446
GE+ N F +L KN+ +NL C+ MY+
Sbjct: 77 GEIINDFIFLDFKKNLKLNLSCVGKMYL 104
>SB_18434| Best HMM Match : DUF646 (HMM E-Value=4.8)
Length = 178
Score = 28.3 bits (60), Expect = 5.6
Identities = 10/31 (32%), Positives = 19/31 (61%)
Frame = +1
Query: 472 KKIRNRKSLSDLCKRQG*VPPPSPRIHVSHA 564
+++R++ S +G P PSPR+H +H+
Sbjct: 110 REVRSKASAPAKVHAEGAAPAPSPRMHAAHS 140
>SB_8656| Best HMM Match : Chorion_3 (HMM E-Value=2.4)
Length = 352
Score = 28.3 bits (60), Expect = 5.6
Identities = 10/31 (32%), Positives = 19/31 (61%)
Frame = +1
Query: 472 KKIRNRKSLSDLCKRQG*VPPPSPRIHVSHA 564
+++R++ S +G P PSPR+H +H+
Sbjct: 284 REVRSKASAPAKVHAEGAAPAPSPRMHAAHS 314
>SB_34832| Best HMM Match : SAP (HMM E-Value=1.4e-07)
Length = 1054
Score = 27.9 bits (59), Expect = 7.4
Identities = 20/78 (25%), Positives = 39/78 (50%)
Frame = -1
Query: 502 QITTYGFVFF*DYYCSVSVTYMTNKHLRLTKIFLIIVRYLKALNNSPTVLLPFPVIQKHF 323
++ TYG F Y + ++ + +K R+TK ++ + + NSP ++ VIQ
Sbjct: 449 EVPTYGAKIFKRIYQTYQLSQLISKPTRITKSSKCLLDHY--VTNSPEKIVKTSVIQLGL 506
Query: 322 LTHTLPVIIVRNEISFKT 269
H + I+ +I++KT
Sbjct: 507 SDHGM--ILGIRKINYKT 522
>SB_16078| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 392
Score = 27.5 bits (58), Expect = 9.7
Identities = 14/52 (26%), Positives = 26/52 (50%)
Frame = -1
Query: 490 YGFVFF*DYYCSVSVTYMTNKHLRLTKIFLIIVRYLKALNNSPTVLLPFPVI 335
Y + F ++SV Y+T K R+ +++ L A + T+ LPF ++
Sbjct: 30 YAIIVFVSLVGNLSVCYVTYKENRMRSFAYVLIGNLAASDVLATLCLPFILV 81
>SB_30673| Best HMM Match : efhand (HMM E-Value=0.00017)
Length = 256
Score = 27.5 bits (58), Expect = 9.7
Identities = 14/56 (25%), Positives = 27/56 (48%)
Frame = +2
Query: 428 FVRHVRDRNRTVVILKKYETVSRYLISVNGKGRYHHHHPAFMLVMLFILXVGVDNE 595
++ V + N + K++E + Y+ V+ Y HH +++ +I V DNE
Sbjct: 184 YIAMVSEDNEYLHHPKEHEVMIPYIAMVSEDNEYLHHPKEHEVMIPYIAMVSEDNE 239
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,856,203
Number of Sequences: 59808
Number of extensions: 332932
Number of successful extensions: 831
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 633
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 812
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1608851125
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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