Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1396
         (640 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U47849-1|AAC47196.2|  829|Drosophila melanogaster Lozenge protein.     25   7.9  
AF217651-2|AAF35308.1|  826|Drosophila melanogaster lozenge prot...    25   7.9  
AE014298-1325|AAF46486.2|  826|Drosophila melanogaster CG1689-PA...    25   7.9  
DQ397338-1|ABD59005.1|  705|Drosophila melanogaster Lozenge spli...    25   8.0  

>U47849-1|AAC47196.2|  829|Drosophila melanogaster Lozenge protein.
          Length = 829

 Score = 25.4 bits (53), Expect(2) = 7.9
 Identities = 8/12 (66%), Positives = 9/12 (75%)
 Frame = +2

Query: 506 SVNGKGRYHHHH 541
           S+NG G  HHHH
Sbjct: 99  SINGSGGSHHHH 110



 Score = 21.4 bits (43), Expect(2) = 7.9
 Identities = 5/8 (62%), Positives = 7/8 (87%)
 Frame = +2

Query: 527 YHHHHPAF 550
           +HHHHP +
Sbjct: 136 HHHHHPPY 143


>AF217651-2|AAF35308.1|  826|Drosophila melanogaster lozenge
           protein.
          Length = 826

 Score = 25.4 bits (53), Expect(2) = 7.9
 Identities = 8/12 (66%), Positives = 9/12 (75%)
 Frame = +2

Query: 506 SVNGKGRYHHHH 541
           S+NG G  HHHH
Sbjct: 99  SINGSGGSHHHH 110



 Score = 21.4 bits (43), Expect(2) = 7.9
 Identities = 5/8 (62%), Positives = 7/8 (87%)
 Frame = +2

Query: 527 YHHHHPAF 550
           +HHHHP +
Sbjct: 136 HHHHHPPY 143


>AE014298-1325|AAF46486.2|  826|Drosophila melanogaster CG1689-PA
           protein.
          Length = 826

 Score = 25.4 bits (53), Expect(2) = 7.9
 Identities = 8/12 (66%), Positives = 9/12 (75%)
 Frame = +2

Query: 506 SVNGKGRYHHHH 541
           S+NG G  HHHH
Sbjct: 99  SINGSGGSHHHH 110



 Score = 21.4 bits (43), Expect(2) = 7.9
 Identities = 5/8 (62%), Positives = 7/8 (87%)
 Frame = +2

Query: 527 YHHHHPAF 550
           +HHHHP +
Sbjct: 136 HHHHHPPY 143


>DQ397338-1|ABD59005.1|  705|Drosophila melanogaster Lozenge splice
           variant protein.
          Length = 705

 Score = 25.4 bits (53), Expect(2) = 8.0
 Identities = 8/12 (66%), Positives = 9/12 (75%)
 Frame = +2

Query: 506 SVNGKGRYHHHH 541
           S+NG G  HHHH
Sbjct: 99  SINGSGGSHHHH 110



 Score = 21.4 bits (43), Expect(2) = 8.0
 Identities = 5/8 (62%), Positives = 7/8 (87%)
 Frame = +2

Query: 527 YHHHHPAF 550
           +HHHHP +
Sbjct: 136 HHHHHPPY 143


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 26,044,258
Number of Sequences: 53049
Number of extensions: 497744
Number of successful extensions: 1283
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1199
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1277
length of database: 24,988,368
effective HSP length: 82
effective length of database: 20,638,350
effective search space used: 2682985500
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)