Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1396
         (640 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ435332-1|ABD92647.1|  135|Apis mellifera OBP15 protein.              26   0.35 
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    24   1.1  
AB086196-1|BAD06465.1|  289|Apis mellifera Period protein.             24   1.1  
DQ435325-1|ABD92640.1|  160|Apis mellifera OBP7 protein.               22   4.4  
S76957-1|AAB33932.1|  169|Apis mellifera olfactory receptor prot...    22   5.8  

>DQ435332-1|ABD92647.1|  135|Apis mellifera OBP15 protein.
          Length = 135

 Score = 25.8 bits (54), Expect = 0.35
 Identities = 11/23 (47%), Positives = 17/23 (73%)
 Frame = -1

Query: 436 TNKHLRLTKIFLIIVRYLKALNN 368
           TN HL++TKIF  I ++ K +N+
Sbjct: 110 TNVHLKITKIFQCITKF-KTIND 131


>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 24.2 bits (50), Expect = 1.1
 Identities = 10/33 (30%), Positives = 18/33 (54%)
 Frame = +1

Query: 421 SSVCSSCT*QKQNSSNLKKIRNRKSLSDLCKRQ 519
           S+ CS+   Q+ + S++ +  NR   S  C R+
Sbjct: 18  SNTCSNSQSQRSSGSSISRNSNRSESSGYCGRR 50


>AB086196-1|BAD06465.1|  289|Apis mellifera Period protein.
          Length = 289

 Score = 24.2 bits (50), Expect = 1.1
 Identities = 10/33 (30%), Positives = 18/33 (54%)
 Frame = +1

Query: 421 SSVCSSCT*QKQNSSNLKKIRNRKSLSDLCKRQ 519
           S+ CS+   Q+ + S++ +  NR   S  C R+
Sbjct: 18  SNTCSNSQSQRSSGSSISRNSNRSESSGYCGRR 50


>DQ435325-1|ABD92640.1|  160|Apis mellifera OBP7 protein.
          Length = 160

 Score = 22.2 bits (45), Expect = 4.4
 Identities = 12/37 (32%), Positives = 19/37 (51%)
 Frame = -3

Query: 440 HDEQTLEINKNILNNRKVFKSIK*LSDCIAAIPSDSK 330
           +DE  L+    + N + +   +K LS+CI A  S  K
Sbjct: 91  NDEIQLDKLVEMANRKNISIDVKMLSECINANKSTDK 127


>S76957-1|AAB33932.1|  169|Apis mellifera olfactory receptor
           protein.
          Length = 169

 Score = 21.8 bits (44), Expect = 5.8
 Identities = 11/42 (26%), Positives = 23/42 (54%), Gaps = 1/42 (2%)
 Frame = -1

Query: 466 YYCSVSVTY-MTNKHLRLTKIFLIIVRYLKALNNSPTVLLPF 344
           ++C +S +  +     RL K+ + IV     + +SPT+L+ +
Sbjct: 57  FFCDMSPSLSLLCADTRLNKLAVFIVAGAVGVFSSPTILISY 98


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 171,778
Number of Sequences: 438
Number of extensions: 3381
Number of successful extensions: 12
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 19193721
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)