Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1396
         (640 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g18350.1 68417.m02722 9-cis-epoxycarotenoid dioxygenase, puta...    29   3.4  
At2g25790.1 68415.m03095 leucine-rich repeat transmembrane prote...    28   4.5  

>At4g18350.1 68417.m02722 9-cis-epoxycarotenoid dioxygenase,
           putative / neoxanthin cleavage enzyme, putative /
           carotenoid cleavage dioxygenase, putative neoxanthin
           cleavage enzyme, Lycopersicon esculentum,
           PATCHX:E325797; and viviparous-14, Zea mays,
           PATCHX:G2232017; similar to 9-cis-epoxycarotenoid
           dioxygenase [Phaseolus vulgaris][GI:6715257]
          Length = 583

 Score = 28.7 bits (61), Expect = 3.4
 Identities = 14/29 (48%), Positives = 18/29 (62%), Gaps = 2/29 (6%)
 Frame = -3

Query: 452 FCHVHDEQTLEINKNILN--NRKVFKSIK 372
           FCHVHDE+T      I+N  N K+  +IK
Sbjct: 532 FCHVHDEETKTSELQIINAVNLKLEATIK 560


>At2g25790.1 68415.m03095 leucine-rich repeat transmembrane protein
           kinase, putative
          Length = 960

 Score = 28.3 bits (60), Expect = 4.5
 Identities = 8/16 (50%), Positives = 12/16 (75%)
 Frame = +2

Query: 527 YHHHHPAFMLVMLFIL 574
           +HHHHP +++  LF L
Sbjct: 5   HHHHHPPYLITTLFFL 20


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,604,064
Number of Sequences: 28952
Number of extensions: 237191
Number of successful extensions: 492
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 487
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 492
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1314848736
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)