Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1395
         (666 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC11E10.05c |ynd1||nucleoside diphosphatase |Schizosaccharomyc...    28   1.1  
SPAC105.03c |||transcription factor |Schizosaccharomyces pombe|c...    27   1.8  
SPBC530.13 |||cyclin Ctk2|Schizosaccharomyces pombe|chr 2|||Manual     27   3.2  
SPBC646.08c |||oxysterol binding protein |Schizosaccharomyces po...    26   4.2  
SPBC12D12.02c |cdm1||DNA polymerase delta subunit Cdm1|Schizosac...    25   9.8  
SPBC25B2.07c |mug164||microtubule-associated protein|Schizosacch...    25   9.8  

>SPCC11E10.05c |ynd1||nucleoside diphosphatase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 572

 Score = 28.3 bits (60), Expect = 1.1
 Identities = 14/44 (31%), Positives = 24/44 (54%)
 Frame = +1

Query: 508 YREEVENIQPQVYQPQPXRTTSNLKYISRLSXSATRQPSIRHHF 639
           + +++E   P  +   P RTTS+     RLS +A+R+ + R  F
Sbjct: 528 FSDDLEMSSPSKWHGPPIRTTSSHVLADRLSFTASRERTPRSPF 571


>SPAC105.03c |||transcription factor |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 708

 Score = 27.5 bits (58), Expect = 1.8
 Identities = 12/40 (30%), Positives = 24/40 (60%)
 Frame = -3

Query: 268 QVGTDCRLLNQIVWWGLFSDQKRRISVYILLTFNLLLSEY 149
           Q+  + ++L   VWW LF ++K  +S+YI +  ++   +Y
Sbjct: 436 QIPKEEKILRNRVWWALFVNEK-WLSMYIGINASIRQDDY 474


>SPBC530.13 |||cyclin Ctk2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 325

 Score = 26.6 bits (56), Expect = 3.2
 Identities = 12/31 (38%), Positives = 17/31 (54%)
 Frame = +2

Query: 572 ATLSISAACLXQQPVNPVSGTTFFLPQLISQ 664
           A  SIS AC  QQ   P+   +FF P  +++
Sbjct: 189 AVASISIACKLQQLPQPIIPRSFFAPPALTE 219


>SPBC646.08c |||oxysterol binding protein |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 516

 Score = 26.2 bits (55), Expect = 4.2
 Identities = 12/42 (28%), Positives = 23/42 (54%)
 Frame = +1

Query: 490 PRIREQYREEVENIQPQVYQPQPXRTTSNLKYISRLSXSATR 615
           P  + +Y E  +    + Y+P+  RTTS+    S ++ S+T+
Sbjct: 155 PTYKTEYSETTKFPLGKSYRPKASRTTSSQSVASTMTKSSTK 196


>SPBC12D12.02c |cdm1||DNA polymerase delta subunit
           Cdm1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 160

 Score = 25.0 bits (52), Expect = 9.8
 Identities = 10/35 (28%), Positives = 18/35 (51%)
 Frame = +2

Query: 113 FDGPAHFAAFPSVLAQQQVEGQQNINRNPPLLIGE 217
           FD  A +  +  +   Q+ +  +N N NPP  +G+
Sbjct: 100 FDTTARYGPYLGMTRMQRWKRAKNFNLNPPETVGK 134


>SPBC25B2.07c |mug164||microtubule-associated
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 501

 Score = 25.0 bits (52), Expect = 9.8
 Identities = 11/31 (35%), Positives = 16/31 (51%)
 Frame = +2

Query: 167 VEGQQNINRNPPLLIGEQAPPNYLVQQPAVS 259
           V    +INR PP  I ++ P N  +  P+ S
Sbjct: 390 VRPSSSINRRPPSSINQRPPSNLRILAPSRS 420


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,310,825
Number of Sequences: 5004
Number of extensions: 40952
Number of successful extensions: 142
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 130
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 142
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 303841898
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)