Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1395
         (666 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_03_1765 - 29329350-29331290,29331705-29331827,29332205-29333026     29   3.3  
05_02_0037 + 5883285-5884292                                           28   7.7  

>07_03_1765 - 29329350-29331290,29331705-29331827,29332205-29333026
          Length = 961

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 14/34 (41%), Positives = 17/34 (50%)
 Frame = -1

Query: 126 AGPSNPXGFCSTCSGWT*LSLICCKGTNCGCSCS 25
           A PS P   C T S +   S+I C+   CGC  S
Sbjct: 714 APPSKPPSCCVTFSAFYNESVIPCRTCACGCPAS 747


>05_02_0037 + 5883285-5884292
          Length = 335

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 11/33 (33%), Positives = 14/33 (42%)
 Frame = -1

Query: 132 KCAGPSNPXGFCSTCSGWT*LSLICCKGTNCGC 34
           +C  PS P  +   C       + CC G NC C
Sbjct: 303 RCCWPSPPSVWWPRCGCGGGCGVFCCGGENCRC 335


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,475,467
Number of Sequences: 37544
Number of extensions: 285268
Number of successful extensions: 656
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 645
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 656
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1679486824
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)