Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1395
         (666 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    27   0.21 
DQ257416-1|ABB81847.1|  552|Apis mellifera yellow-h protein.           22   4.6  
AB238796-1|BAE93398.1|  128|Apis mellifera Queen brain-selective...    22   4.6  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             22   4.6  

>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
            protein.
          Length = 1308

 Score = 26.6 bits (56), Expect = 0.21
 Identities = 12/28 (42%), Positives = 15/28 (53%)
 Frame = +1

Query: 235  SGSTTCSQYQPAYQTNYQQPIAMQXQAL 318
            SGS    + QP+ Q   QQPI +  Q L
Sbjct: 1221 SGSVVLGKQQPSQQQTQQQPIILPSQLL 1248



 Score = 21.8 bits (44), Expect = 6.0
 Identities = 19/79 (24%), Positives = 32/79 (40%)
 Frame = +2

Query: 125  AHFAAFPSVLAQQQVEGQQNINRNPPLLIGEQAPPNYLVQQPAVSTNLLTKLITNNQSLC 304
            A  A  P VLA         ++ +  +++G+Q P     QQ  +   +L   + N ++L 
Sbjct: 1198 AQLAGKPIVLASGNKNVGVGVSNSGSVVLGKQQPSQQQTQQQPI---ILPSQLLNIKTLH 1254

Query: 305  XHKHXSQTIWLLTAXLAVF 361
              K       L T   AV+
Sbjct: 1255 GLKVIPTPAGLKTTGAAVY 1273


>DQ257416-1|ABB81847.1|  552|Apis mellifera yellow-h protein.
          Length = 552

 Score = 22.2 bits (45), Expect = 4.6
 Identities = 8/19 (42%), Positives = 12/19 (63%)
 Frame = +1

Query: 298 AMQXQALQPNYLAPNSEXG 354
           A++     PNY+ P+SE G
Sbjct: 529 AVKDTXCDPNYVVPDSEHG 547


>AB238796-1|BAE93398.1|  128|Apis mellifera Queen brain-selective
           protein-1 protein.
          Length = 128

 Score = 22.2 bits (45), Expect = 4.6
 Identities = 17/66 (25%), Positives = 22/66 (33%)
 Frame = -1

Query: 228 GGACSPIKSGGFLFIFC*PSTCC*ASTEGKAAKCAGPSNPXGFCSTCSGWT*LSLICCKG 49
           G +C   K G  +   C    C     +G    C GP N  G C+     +    I C  
Sbjct: 40  GDSCHKCKYGIAMSSACGIVQCA----KGPDELCGGPQNYLGICAEGMQCSCNKCIGCSA 95

Query: 48  TNCGCS 31
               CS
Sbjct: 96  EKFECS 101


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 22.2 bits (45), Expect = 4.6
 Identities = 8/20 (40%), Positives = 14/20 (70%)
 Frame = +1

Query: 499  REQYREEVENIQPQVYQPQP 558
            ++Q + + ++ QPQ  QPQP
Sbjct: 1512 QQQQQPQQQSQQPQQQQPQP 1531


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 160,027
Number of Sequences: 438
Number of extensions: 3142
Number of successful extensions: 7
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20099475
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)