Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1395
         (666 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g53860.2 68418.m06698 expressed protein                             29   3.7  
At5g53860.1 68418.m06697 expressed protein                             29   3.7  
At3g20710.1 68416.m02621 F-box protein-related contains weak hit...    28   4.9  
At1g59590.1 68414.m06702 expressed protein                             28   4.9  
At5g66350.1 68418.m08365 zinc finger protein, putative (SHI) sim...    27   8.5  
At5g08620.1 68418.m01025 DEAD box RNA helicase (RH25) identical ...    27   8.5  

>At5g53860.2 68418.m06698 expressed protein
          Length = 422

 Score = 28.7 bits (61), Expect = 3.7
 Identities = 10/18 (55%), Positives = 11/18 (61%)
 Frame = -1

Query: 99  CSTCSGWT*LSLICCKGT 46
           C TC+GW  L    CKGT
Sbjct: 99  CKTCNGWQALRCTMCKGT 116


>At5g53860.1 68418.m06697 expressed protein
          Length = 402

 Score = 28.7 bits (61), Expect = 3.7
 Identities = 10/18 (55%), Positives = 11/18 (61%)
 Frame = -1

Query: 99  CSTCSGWT*LSLICCKGT 46
           C TC+GW  L    CKGT
Sbjct: 99  CKTCNGWQALRCTMCKGT 116


>At3g20710.1 68416.m02621 F-box protein-related contains weak hit to
           TIGRFAM TIGR01640 : F-box protein interaction domain;
           contains weak hit to Pfam PF00646: F-box domain
          Length = 362

 Score = 28.3 bits (60), Expect = 4.9
 Identities = 18/54 (33%), Positives = 25/54 (46%)
 Frame = -1

Query: 651 WGRKKVVPDTGLTGC*XRQAADILKVAGSSVRLRLINLRLDIFNLFPILFSDSW 490
           WG+ K +      GC  R A    K +GS   LRL  +  +  N++  L S SW
Sbjct: 128 WGQTKRIMPRPPFGCFDRYALGYDKSSGSHKILRLFGVNQNNLNIYD-LSSSSW 180


>At1g59590.1 68414.m06702 expressed protein
          Length = 211

 Score = 28.3 bits (60), Expect = 4.9
 Identities = 12/33 (36%), Positives = 19/33 (57%)
 Frame = +1

Query: 496 IREQYREEVENIQPQVYQPQPXRTTSNLKYISR 594
           ++E   EE++N +P+  Q Q      NLK I+R
Sbjct: 97  VKEAKTEEIKNTEPETEQKQSCVINENLKKIAR 129


>At5g66350.1 68418.m08365 zinc finger protein, putative (SHI)
           similar to lateral root primordium 1 (LRP1) [Arabidopsis
           thaliana] GI:882341; contains Pfam profile PF05142:
           Domain of unknown function (DUF702); identical to cDNA
           putative zinc finger protein SHI (SHI)  GI:4929802
          Length = 331

 Score = 27.5 bits (58), Expect = 8.5
 Identities = 19/67 (28%), Positives = 30/67 (44%), Gaps = 1/67 (1%)
 Frame = +2

Query: 101 KPXGFDGPAHFAAFPSVLAQQQVEGQQNINRNPPLLIGEQAPPNYLVQQPAVSTNL-LTK 277
           K  G D P H  +     A+++   QQ      P  +G   P     + PA ST++  T+
Sbjct: 141 KSRGLDCPTHVKSTWVPAAKRRERQQQLSTGQQPQQLGGSVPKRQRERIPARSTSMAYTR 200

Query: 278 LITNNQS 298
           + +NN S
Sbjct: 201 IPSNNTS 207


>At5g08620.1 68418.m01025 DEAD box RNA helicase (RH25) identical to
           RNA helicase [Arabidopsis thaliana] GI:3776023; contains
           Pfam profiles PF00270: DEAD/DEAH box helicase, PF00271:
           Helicase conserved C-terminal domain
          Length = 563

 Score = 27.5 bits (58), Expect = 8.5
 Identities = 14/45 (31%), Positives = 21/45 (46%)
 Frame = +2

Query: 143 PSVLAQQQVEGQQNINRNPPLLIGEQAPPNYLVQQPAVSTNLLTK 277
           PS+ A  +       NR+PP+++    P   L  Q A   N+L K
Sbjct: 137 PSIEAVIKAPPASRDNRHPPIIVLVVCPTRELACQAAAEANILLK 181


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,249,476
Number of Sequences: 28952
Number of extensions: 223320
Number of successful extensions: 682
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 665
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 681
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1403159472
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)