Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1393
         (600 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC19A8.03 |||phosphatidylinositol-3-phosphatase |Schizosacchar...    67   2e-12
SPAC1687.21 ||SPAC222.01|phosphoglycerate mutase family |Schizos...    26   4.8  
SPAC4G8.09 |||mitochondrial leucine-tRNA ligase|Schizosaccharomy...    25   6.4  
SPAC167.07c ||SPAC57A7.03c|ubiquitin-protein ligase E3 |Schizosa...    25   8.5  
SPAC1006.03c |||human CCDC131 homolog|Schizosaccharomyces pombe|...    25   8.5  

>SPAC19A8.03 |||phosphatidylinositol-3-phosphatase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 559

 Score = 66.9 bits (156), Expect = 2e-12
 Identities = 26/47 (55%), Positives = 38/47 (80%), Gaps = 1/47 (2%)
 Frame = -1

Query: 486 TDGMS-TAQISSLAQICLEPYYRTLEGFRIIVEKEWLALGHKFQQRC 349
           +DG   T+Q+ +L Q+CL+PYYRT+EGF  +VEK+WL+ GH+F +RC
Sbjct: 343 SDGWDRTSQLCALPQLCLDPYYRTIEGFFALVEKDWLSFGHRFAERC 389



 Score = 41.9 bits (94), Expect = 7e-05
 Identities = 18/51 (35%), Positives = 29/51 (56%)
 Frame = -3

Query: 298 LGCCTSATETVPAGVEFNEYYLRFVAYHSVSCRFRTFXLDSEAQRAELGIT 146
           L C     +  P   EFNE +LR + YH  SC++ +F  +SE +RA+  ++
Sbjct: 448 LDCVWQIMDQFPNCFEFNERFLRRLLYHLYSCQYGSFLYNSERERAQASVS 498



 Score = 25.4 bits (53), Expect = 6.4
 Identities = 10/19 (52%), Positives = 12/19 (63%)
 Frame = -1

Query: 318 TPTFLMFLDAVHQLQKQFP 262
           +P F  FLD V Q+  QFP
Sbjct: 441 SPVFHQFLDCVWQIMDQFP 459


>SPAC1687.21 ||SPAC222.01|phosphoglycerate mutase family
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 209

 Score = 25.8 bits (54), Expect = 4.8
 Identities = 11/28 (39%), Positives = 16/28 (57%)
 Frame = +1

Query: 316 CEALLRCGSDVTPLLELVPEGQPLLLDD 399
           C ++ RC   + P LEL PE  P++  D
Sbjct: 52  CSSMKRCRETIAPYLELKPE-VPIVYTD 78


>SPAC4G8.09 |||mitochondrial leucine-tRNA ligase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 874

 Score = 25.4 bits (53), Expect = 6.4
 Identities = 13/39 (33%), Positives = 20/39 (51%)
 Frame = -3

Query: 340 SHTATRLHTHIPHVLGCCTSATETVPAGVEFNEYYLRFV 224
           S+  T + T  P   G  T  T+T+   V+ + YY RF+
Sbjct: 479 SNLETWMKTTCPKCHGPATRETDTMDTFVDSSWYYFRFL 517


>SPAC167.07c ||SPAC57A7.03c|ubiquitin-protein ligase E3
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1029

 Score = 25.0 bits (52), Expect = 8.5
 Identities = 9/26 (34%), Positives = 16/26 (61%)
 Frame = -2

Query: 305 SCSWMLYISYRNSSRWRRVQRVLPAV 228
           +C  +L+  Y+NSS W+    +L A+
Sbjct: 315 NCLHLLHTEYKNSSLWKFCSYILDAL 340



 Score = 25.0 bits (52), Expect = 8.5
 Identities = 9/27 (33%), Positives = 16/27 (59%)
 Frame = -1

Query: 411 GFRIIVEKEWLALGHKFQQRCNIGATP 331
           GF  I++  WLA+ H+ + +  +G  P
Sbjct: 888 GFTQIIDPHWLAMFHESEIQILVGGDP 914


>SPAC1006.03c |||human CCDC131 homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 714

 Score = 25.0 bits (52), Expect = 8.5
 Identities = 13/53 (24%), Positives = 24/53 (45%)
 Frame = -3

Query: 283 SATETVPAGVEFNEYYLRFVAYHSVSCRFRTFXLDSEAQRAELGITAADDKRA 125
           + ++    GV FN++    +    V   F    LDS +  ++  +T + DK A
Sbjct: 201 AVSQLFEVGVRFNDFIAEGIEPSVVHTLFLKLGLDSSSASSQGSLTLSADKAA 253


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,034,142
Number of Sequences: 5004
Number of extensions: 38609
Number of successful extensions: 107
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 102
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 107
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 262236260
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)