Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1393
         (600 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_02_1556 - 27852247-27852738,27853005-27853197,27854006-278540...    57   1e-08
08_02_1063 + 24024030-24024506,24024803-24024856,24024965-240251...    30   1.2  
04_01_0153 - 1767023-1768477                                           29   3.8  
08_02_0470 - 17551368-17552330,17552420-17552920                       28   5.0  

>08_02_1556 -
           27852247-27852738,27853005-27853197,27854006-27854070,
           27854161-27854199,27854572-27854592,27854819-27855052,
           27855420-27855504,27855953-27856026,27856516-27856647,
           27856735-27856834,27857296-27857361,27857472-27857509,
           27858013-27858219,27858378-27858427,27858871-27858940,
           27859065-27859133,27859456-27859530,27860456-27860530,
           27860887-27860934
          Length = 710

 Score = 56.8 bits (131), Expect = 1e-08
 Identities = 24/49 (48%), Positives = 34/49 (69%), Gaps = 1/49 (2%)
 Frame = -1

Query: 486 TDGMS-TAQISSLAQICLEPYYRTLEGFRIIVEKEWLALGHKFQQRCNI 343
           +DG   T Q+ +LA + L+PYYRT  GF+ +VEK+WLA GH F +R  +
Sbjct: 335 SDGWDRTTQLVALACLLLDPYYRTFNGFQALVEKDWLAFGHPFAERMGV 383


>08_02_1063 +
           24024030-24024506,24024803-24024856,24024965-24025118,
           24025314-24025388,24025511-24025788,24026023-24026253,
           24026522-24026620,24026740-24026889,24027830-24027976,
           24028525-24028575,24028647-24028819,24029018-24029147,
           24029361-24029458,24029655-24029892,24030634-24030837,
           24031003-24031083,24031296-24031535
          Length = 959

 Score = 30.3 bits (65), Expect = 1.2
 Identities = 13/29 (44%), Positives = 20/29 (68%)
 Frame = +1

Query: 322 ALLRCGSDVTPLLELVPEGQPLLLDDDPE 408
           A L+  SD+T LL ++P    L++D+DPE
Sbjct: 372 AKLKATSDMTGLLNILPSKARLMVDNDPE 400


>04_01_0153 - 1767023-1768477
          Length = 484

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 12/24 (50%), Positives = 17/24 (70%)
 Frame = -2

Query: 263 RWRRVQRVLPAVRRVPQRVLPLPD 192
           RWRR++R+L + RR  +  LPL D
Sbjct: 197 RWRRIRRLLSSRRRQAELYLPLID 220


>08_02_0470 - 17551368-17552330,17552420-17552920
          Length = 487

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 17/51 (33%), Positives = 25/51 (49%), Gaps = 2/51 (3%)
 Frame = -3

Query: 415 GRVPDHRREGV--AGPRAQVPAAV*HRSHTATRLHTHIPHVLGCCTSATET 269
           GR+PD R   +  A PR +    +   +  +   H HI  +LGCC +A  T
Sbjct: 209 GRLPDRREVAIRRASPRRKGDF-LRELAILSPLRHDHIVRLLGCCVAAATT 258


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,471,690
Number of Sequences: 37544
Number of extensions: 297083
Number of successful extensions: 872
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 859
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 872
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1435654836
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)