Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1393
         (600 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_30585| Best HMM Match : Myotub-related (HMM E-Value=2.9e-17)       109   2e-24
SB_19105| Best HMM Match : 7tm_1 (HMM E-Value=5e-08)                   88   6e-18
SB_10947| Best HMM Match : PH (HMM E-Value=1.3e-11)                    82   4e-16
SB_31747| Best HMM Match : Myotub-related (HMM E-Value=0)              78   6e-15
SB_3686| Best HMM Match : Myotub-related (HMM E-Value=2.8e-08)         64   8e-11
SB_59148| Best HMM Match : No HMM Matches (HMM E-Value=.)              60   1e-09
SB_25991| Best HMM Match : No HMM Matches (HMM E-Value=.)              43   2e-04
SB_53708| Best HMM Match : No HMM Matches (HMM E-Value=.)              33   0.18 
SB_1208| Best HMM Match : GRAM (HMM E-Value=0.0034)                    33   0.23 
SB_21520| Best HMM Match : Trypsin (HMM E-Value=0)                     30   1.6  
SB_45256| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.6  
SB_33756| Best HMM Match : zf-C3HC4 (HMM E-Value=0.0035)               28   6.6  
SB_46046| Best HMM Match : DUF164 (HMM E-Value=0.38)                   27   8.8  
SB_42612| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.8  

>SB_30585| Best HMM Match : Myotub-related (HMM E-Value=2.9e-17)
          Length = 488

 Score =  109 bits (261), Expect = 2e-24
 Identities = 50/100 (50%), Positives = 68/100 (68%)
 Frame = -1

Query: 579 LWQLQTICFKLSGAVVDLLDVQGSLCCCPWKTDGMSTAQISSLAQICLEPYYRTLEGFRI 400
           L QL  +   +S  +VDL+D+QGS     ++     TAQ+  LA+ICL+ +YR++EGF+ 
Sbjct: 390 LHQLSAV-MNVSNVLVDLIDIQGSSVMVCFEDGWDVTAQVVCLAEICLDSHYRSIEGFKT 448

Query: 399 IVEKEWLALGHKFQQRCNIGATPQQGFTPTFLMFLDAVHQ 280
           ++EKEWL  GH+F QRCN   + Q GFTP FL FLDAVHQ
Sbjct: 449 LIEKEWLGFGHRFTQRCNQVESAQSGFTPVFLQFLDAVHQ 488


>SB_19105| Best HMM Match : 7tm_1 (HMM E-Value=5e-08)
          Length = 791

 Score = 87.8 bits (208), Expect = 6e-18
 Identities = 49/117 (41%), Positives = 66/117 (56%), Gaps = 2/117 (1%)
 Frame = -1

Query: 600 KWKS-LTGLWQLQTICFKLSGAVVDLLDVQGSLCCCPWKTDGMS-TAQISSLAQICLEPY 427
           KW S L     L  I   L GA      V   +      +DG   T+Q++SLAQ+ L+PY
Sbjct: 45  KWLSHLESTQWLAYIAAILKGATTIARFVDKGVSTLVHCSDGWDRTSQLTSLAQLLLDPY 104

Query: 426 YRTLEGFRIIVEKEWLALGHKFQQRCNIGATPQQGFTPTFLMFLDAVHQLQKQFPLA 256
           YRT  GF++++EKEW++ GH+F+ R      P Q  +P FL FLD V Q+ KQFP A
Sbjct: 105 YRTFTGFQVLIEKEWISFGHRFRDRLGHPTCPSQR-SPIFLQFLDCVWQVHKQFPSA 160


>SB_10947| Best HMM Match : PH (HMM E-Value=1.3e-11)
          Length = 591

 Score = 81.8 bits (193), Expect = 4e-16
 Identities = 38/77 (49%), Positives = 54/77 (70%), Gaps = 5/77 (6%)
 Frame = -1

Query: 471 TAQISSLAQICLEPYYRTLEGFRIIVEKEWLALGHKFQQR-----CNIGATPQQGFTPTF 307
           TAQ+SSL Q+ L+PYYRTL+GF+++++KEWL+ GHKF  R      N  +T + G  P F
Sbjct: 166 TAQVSSLVQVMLDPYYRTLDGFQVLIQKEWLSFGHKFADRILPPETNPESTEEHG--PVF 223

Query: 306 LMFLDAVHQLQKQFPLA 256
           L +LD V QL +Q+P +
Sbjct: 224 LQWLDCVWQLTQQYPFS 240



 Score = 40.7 bits (91), Expect = 9e-04
 Identities = 39/153 (25%), Positives = 61/153 (39%), Gaps = 3/153 (1%)
 Frame = -3

Query: 598 VEKSDWFVAAPDNLFQTVWCCGGLVRCXRFSVLLSLEDGWD--VNCTDIIVSSDLPGALL 425
           +E+++W     + L QT       + C + SVL S EDG D     + ++     P    
Sbjct: 125 LEETEWLTQLSE-LLQTATQAAVAMDCDKSSVLFSYEDGCDRTAQVSSLVQVMLDPYYRT 183

Query: 424 QDAGRVPDHRREGVAGPRAQVPAAV*HRSHTATRLHTHI-PHVLGCCTSATETVPAGVEF 248
            D  +V   +     G +          +  +T  H  +    L C    T+  P   +F
Sbjct: 184 LDGFQVLIQKEWLSFGHKFADRILPPETNPESTEEHGPVFLQWLDCVWQLTQQYPFSFQF 243

Query: 247 NEYYLRFVAYHSVSCRFRTFXLDSEAQRAELGI 149
           NEY L+ +A  + S RF TF  +S   R E  I
Sbjct: 244 NEYLLKTIAESAYSSRFGTFLANSSRDREENSI 276


>SB_31747| Best HMM Match : Myotub-related (HMM E-Value=0)
          Length = 550

 Score = 77.8 bits (183), Expect = 6e-15
 Identities = 39/86 (45%), Positives = 55/86 (63%), Gaps = 11/86 (12%)
 Frame = -1

Query: 486 TDGMS-TAQISSLAQICLEPYYRTLE---------GFRIIVEKEWLALGHKFQQRCNIGA 337
           +DG   T QI +LA++ L+P+YRT+E         GF+I++++EWL  GH+F  RC  G+
Sbjct: 455 SDGWDRTTQIVALAELLLDPFYRTIEVHHRYRTIEGFKILIDREWLQFGHRFADRCGHGS 514

Query: 336 -TPQQGFTPTFLMFLDAVHQLQKQFP 262
              +    P FL +LD VHQLQKQFP
Sbjct: 515 DIDENERCPVFLQWLDCVHQLQKQFP 540


>SB_3686| Best HMM Match : Myotub-related (HMM E-Value=2.8e-08)
          Length = 629

 Score = 64.1 bits (149), Expect = 8e-11
 Identities = 29/68 (42%), Positives = 44/68 (64%), Gaps = 3/68 (4%)
 Frame = -1

Query: 474 STAQISSLAQICLEPYYRTLEGFRIIVEKEWLALGHKFQQRC---NIGATPQQGFTPTFL 304
           +T Q++SL+Q+ L+P  RT+ GF+ +V++EW+  GH F  RC      +T  +G  P FL
Sbjct: 378 ATLQVTSLSQVILDPDCRTVRGFQSLVDREWIRGGHPFSNRCTRVGFSSTKYKGQGPVFL 437

Query: 303 MFLDAVHQ 280
           +FLD V Q
Sbjct: 438 LFLDCVWQ 445


>SB_59148| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 469

 Score = 60.1 bits (139), Expect = 1e-09
 Identities = 31/75 (41%), Positives = 44/75 (58%), Gaps = 8/75 (10%)
 Frame = -1

Query: 462 ISSLAQICLEPYYRTLEGFRIIVEKEWLALGHKFQQRC-------NIGATPQQG-FTPTF 307
           + SLAQ+ L+ YYR + GF+ +++K W+  GH F +RC          A  Q+   +P F
Sbjct: 175 VCSLAQLMLDQYYRNIRGFQTLIQKMWVLGGHPFMKRCGHIKPNEKSDADKQENEESPVF 234

Query: 306 LMFLDAVHQLQKQFP 262
           L FLD V+QL  QFP
Sbjct: 235 LHFLDCVYQLITQFP 249



 Score = 29.5 bits (63), Expect = 2.2
 Identities = 16/47 (34%), Positives = 20/47 (42%)
 Frame = -3

Query: 304 HVLGCCTSATETVPAGVEFNEYYLRFVAYHSVSCRFRTFXLDSEAQR 164
           H L C        P+  EF+E YL  +     +C F  F  D E QR
Sbjct: 236 HFLDCVYQLITQFPSEFEFSETYLLGMLDSMHACLFDEFLFDCEHQR 282


>SB_25991| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 82

 Score = 43.2 bits (97), Expect = 2e-04
 Identities = 17/39 (43%), Positives = 26/39 (66%)
 Frame = -1

Query: 408 FRIIVEKEWLALGHKFQQRCNIGATPQQGFTPTFLMFLD 292
           F++++EKEW++ GH+F+ R      P Q  +P FL FLD
Sbjct: 40  FQVLIEKEWISFGHRFRDRLGHPTCPSQR-SPIFLQFLD 77


>SB_53708| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 244

 Score = 33.1 bits (72), Expect = 0.18
 Identities = 16/39 (41%), Positives = 20/39 (51%), Gaps = 4/39 (10%)
 Frame = -1

Query: 513 GSLCCCPWKT----DGMSTAQISSLAQICLEPYYRTLEG 409
           G LCC  W+T      MST  +S++   CL  Y  T EG
Sbjct: 171 GELCCWHWRTVRTHSHMSTRDLSTIGLQCLSKYTETCEG 209


>SB_1208| Best HMM Match : GRAM (HMM E-Value=0.0034)
          Length = 1021

 Score = 32.7 bits (71), Expect = 0.23
 Identities = 22/69 (31%), Positives = 36/69 (52%)
 Frame = -1

Query: 474 STAQISSLAQICLEPYYRTLEGFRIIVEKEWLALGHKFQQRCNIGATPQQGFTPTFLMFL 295
           S  ++++LA + ++PYYRT+ GF           GH  +      A  Q+  +P FL F+
Sbjct: 99  SNGKLTALAMLLMDPYYRTIIGFE--------RYGHGDKNH----ADDQR--SPVFLQFI 144

Query: 294 DAVHQLQKQ 268
           D V Q+ +Q
Sbjct: 145 DCVWQVTRQ 153


>SB_21520| Best HMM Match : Trypsin (HMM E-Value=0)
          Length = 800

 Score = 29.9 bits (64), Expect = 1.6
 Identities = 16/39 (41%), Positives = 21/39 (53%), Gaps = 1/39 (2%)
 Frame = +1

Query: 484 RLPGTTAQRTLXI*QVHHSTRQFETN-CLELPQTSQTFP 597
           RLP TT Q+T  +  VHH+T+   T     LP  + T P
Sbjct: 567 RLPTTTRQKTTQVSTVHHATKGPATGVTTTLPTETATIP 605


>SB_45256| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 305

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 10/28 (35%), Positives = 18/28 (64%)
 Frame = -2

Query: 305 SCSWMLYISYRNSSRWRRVQRVLPAVRR 222
           +C  MLY +  N S+W  + ++LP +R+
Sbjct: 10  ACKCMLYFNSENPSKWDDLLQLLPRLRQ 37


>SB_33756| Best HMM Match : zf-C3HC4 (HMM E-Value=0.0035)
          Length = 351

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 10/28 (35%), Positives = 18/28 (64%)
 Frame = -2

Query: 305 SCSWMLYISYRNSSRWRRVQRVLPAVRR 222
           +C  MLY +  N S+W  + ++LP +R+
Sbjct: 10  ACKCMLYFNSENPSKWDDLLQLLPRLRQ 37


>SB_46046| Best HMM Match : DUF164 (HMM E-Value=0.38)
          Length = 221

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 16/60 (26%), Positives = 28/60 (46%)
 Frame = +2

Query: 245 VELDASGNCFCS*CTASKNMRNVGVKPCCGVAPMLHRCWNLCPRASHSFSTMIRNPSSVL 424
           V LD   + F +   A +   N+ ++    +AP+  R W+     + S  T I+ P+S L
Sbjct: 97  VPLDLELDAFATLLEAEERRLNLAMQNPTPLAPLRSRTWHSITTTTPSKITEIKRPASTL 156


>SB_42612| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 732

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 16/60 (26%), Positives = 28/60 (46%)
 Frame = +2

Query: 245 VELDASGNCFCS*CTASKNMRNVGVKPCCGVAPMLHRCWNLCPRASHSFSTMIRNPSSVL 424
           V LD   + F +   A +   N+ ++    +AP+  R W+     + S  T I+ P+S L
Sbjct: 356 VPLDLELDAFATLLEAEERRLNLAMQNPTPLAPLRSRTWHSITTTTPSKITEIKRPASTL 415


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,262,629
Number of Sequences: 59808
Number of extensions: 326238
Number of successful extensions: 1102
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 1012
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1093
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1451595000
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)